Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq301619 172 8e-38 seq117952 107 3e-18 seq316284 95.1 2e-14 seq301777 86.0 9e-12 >seq301619 Length=432943 Score = 172 bits (190), Expect = 8e-38 Identities = 574/882 (65%), Gaps = 32/882 (4%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| ||| |||||||| ||| | ||||||| || ||| |||||||||||||| Sbjct 189265 TTTCCTATCGAGTACCATGACATCTGGCAGATGTACACGAAAGCTGAGGCCTCCTTTTGG 189206 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | |||||||| ||||| |||| ||||| | ||||| | | ||| || Sbjct 189205 ACAGCTGAAGAGGTTGATCTTACCAAAGACCTCCGGCACTGGGAATCCC---TGA---AA 189152 Query 125118 ACT---GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||| || | |||||||||| || || | |||||||| | ||||| || Sbjct 189151 CCTGTGGAGAGATATTTTATATCGCGTGTTCTGACTTTCTTTGCAGCAAGAGATGGCATA 189092 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTG 125233 || || || || || || ||||| |||| |||| | || |||| | || Sbjct 189091 GTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCA-AGTTACAGAAGCCCGCTG 189033 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || || || |||||||| || || ||| | || || ||||||||| | || || Sbjct 189032 TTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTACAGTCTCCTTAT 188973 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGG 125352 ||||| |||||| || || ||| | || | | ||||| || || || || ||| Sbjct 188972 TGACACTTACATTAAAGA-CCCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGA 188914 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 |||| | | | || ||||| | |||| | || |||| | ||| | || || Sbjct 188913 TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTGGACTGGGGACAAAGAGGCTA 188854 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 | || | || | | || || || || || || || ||||||| |||||| ||| || Sbjct 188853 CTTATGGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTGCTTTTCTGGTTCTT 188794 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT---- 125528 || | | || || ||||||||||| | ||||| ||||| || || |||| | Sbjct 188793 TTACATCGATATTCTGGCTCAAGAAATGAGGACTGATGCCTGGCCT----CACATTTCCC 188738 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 || || |||| |||| |||||| ||||||||||||||||| | | ||| | | Sbjct 188737 AATGAACTTATTAGCAGAGATGAGGGCTTACACTGTGACTTTGCC-TGC--CTGATATTC 188681 Query 125589 AACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGA 125647 || | ||| | | | ||| || | | || || | | || | | | | Sbjct 188680 AAACACCTGATACAC-------AAACCATCGGAGCAGAGAGTAAAAGAAATAATCATCAA 188628 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCAT 125707 ||| || ||||||||||| ||||| || || ||| || | || || | | ||||| || Sbjct 188627 TGCAGTTAGGATAGAACAGGAGTTCCTCACAGAAGCCTTGCCTGTGAAGCTCATTGGGAT 188568 Query 125708 GAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT 125767 ||| |||| ||||| | ||||| ||||||||||| || | || || || | Sbjct 188567 GAATTGCATTTTAATGAAGCAATACATCGAGTTTGTGGCTGACAGACTTATGCTGGAACT 188508 Query 125768 GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACT 125827 | | ||||| ||| ||| | | ||||| ||||| || ||| | | ||||| Sbjct 188507 GGGTTTTAGCAAGGTTTTCAAAGTAGAAAATCCATTTGACTTGATGGATAATACTTCACT 188448 Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || || | ||| ||||| || ||||||| || |||| || Sbjct 188447 GGAAGGAATGACTAACTTCTTTGAGAAGAGAGTAGGCGAATA 188406 >seq117952 Length=1479372 Score = 107 bits (118), Expect = 3e-18 Identities = 284/432 (66%), Gaps = 19/432 (4%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || || || | || |||||||||||||| ||| |||||| | || || ||| Sbjct 1360279 GTAGCCTTTGCTGCAATGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 1360220 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT----TTATATCTCG 125545 |||||||| | ||||| ||||| || || |||| | | ||| |||| | Sbjct 1360219 CTCAAGAAACAAGGACTGATGCCTGGTCT----CACATTTTCCAGTGAACTTATTAACAG 1360164 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA 125605 || ||||| ||||||||||||||||| || |||| ||| | ||| | | | Sbjct 1360163 AGTTGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAAACACCTGACACACAA 1360107 Query 125606 GTGCAGATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 ||| | | |||| || | | || | | | |||| || |||||||||| Sbjct 1360106 A-------CCATTGGAGCAAAGAGTAAAAGAAATAATCATCAATGCTGTCAGGATAGAAC 1360054 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | ||||| | ||||| || | || || | | ||||| ||||| |||| ||||| Sbjct 1360053 AGGAGTTCCCCACCGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCATCTTAATGA 1359994 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTT 125784 | ||||| ||||||||||| ||| | || || || || | ||||| ||| Sbjct 1359993 AGCAATACATCGAGTTTGTGGCCGATAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTT 1359934 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 ||| | | ||||| ||||| |||||| | || ||||| || || |||| |||| Sbjct 1359933 TCAAAGTAGAAAATCCATTTGACTTCATGGAGAATATTTCACTGGAAGGAGAGACAAACT 1359874 Query 125845 TTTTCGAGAAGA 125856 | || ||||||| Sbjct 1359873 TCTTTGAGAAGA 1359862 Score = 105 bits (116), Expect = 1e-17 Identities = 203/291 (70%), Gaps = 10/291 (3%) Strand=Plus/Minus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 || |||||||||||| | ||||| || || ||| |||||||||||||||| ||| || Sbjct 1360880 TACCATGACATTTGGCAGATGTATAAGAAAGCTGAGGCCTCCTTTTGGACAACCGAGAAG 1360821 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 || ||||| ||||||||||| | | ||||| | | | |||| ||| |||| Sbjct 1360820 GTTGATCTTTCCAAGGACCTCCAGCACTGGGAAGCCCTGAAGCCTGA---GGAGAGAGAT 1360764 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 ||||||||||| || |||| |||||||| | |||||| || || || || || || Sbjct 1360763 TTTATATCGCATGTTGTGGCTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAACTTG 1360704 Query 125190 TTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCC 125247 | || |||| ||||| |||| | || |||| | ||| | || || || |||| Sbjct 1360703 TGGA-GTGATTTAGTCAAGAAGTTCA-AGTTACAGAAG-CTCGCTATTTCTATGGCTTCC 1360647 Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298 |||| | || ||| | || || | |||||| ||| || ||||||| Sbjct 1360646 AAATTGCTGTGGAAAACATACATTCTGGAATGTAGTCT--CCTTATTGACA 1360598 >seq316284 Length=490044 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | ||||| |||||| || ||||||||||| |||||||| Sbjct 81635 CTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACTCCGTACATGCTCTACAAA 81576 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || ||||| || |||||||| | || | || |||||||| || ||||||| Sbjct 81575 GATGCCTGTAATCGGAAAAGCAACCAGCAGAACATAGGAACCATCAAATGCAGCAATCTG 81516 Query 97299 TGCACGGAAATTGTAGAGTA 97318 || || ||||| ||||||| Sbjct 81515 TGTACAGAAATCATAGAGTA 81496 >seq301777 Length=185553 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| ||||||||||||||| | |||| || || ||| |||||| ||| ||| Sbjct 169451 TTTCCTATCGAATATCATGACATTTGGCAGATGTTTAAGAAAGCTGAGGCCTACTTCTGG 169510 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCT 125089 || | ||| ||||| ||||| ||||||||||| Sbjct 169511 ACAGCCGAGGAGGTTGATCTTTCCAAGGACCT 169542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737935737367640