Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq289273 149 5e-31 seq96983 105 6e-18 >seq289273 Length=322959 Score = 149 bits (164), Expect = 5e-31 Identities = 249/355 (70%), Gaps = 5/355 (1%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || |||| | ||||||| || ||||| || ||||| ||||| || |||| Sbjct 72094 TTGACATCACTCCCATTCTCTGATATTAGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 72153 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC 12962 |||| | |||||||| |||||||| || || ||||||| || | | ||| || Sbjct 72154 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT--ACTCT-GACTTTGCTAA 72210 Query 12963 ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC 13022 | || | ||| || | | ||| ||| | |||||||| ||||| || ||| ||||| | Sbjct 72211 AACC-AGTTCCAGCATAAGTCTATCAACCACAAACTCAATGTATTGCTTC-TTAAAGTGC 72268 Query 13023 AGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAA 13082 | ||||| || || | || || ||| || || || | ||| || | |||||| || Sbjct 72269 AATTCATCCCAATGAGCTTCACCAGCAAGGCCTCAGTGAGAAACTTCTGTTCTATCCTAA 72328 Query 13083 CTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAA 13142 |||| || || ||| ||| ||| | || |||| |||| | || || || |||| Sbjct 72329 CTGCACTGACAATTATTTCTTTTACTCTGTGCTCTGATGGCTTGTGTGCCAGGTGTTTAA 72388 Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 |||||| || |||||||||||| || || |||||||| || || || || || Sbjct 72389 ACATCAGGCAGATAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 72443 >seq96983 Length=126056 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 32465 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 32406 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 32405 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 32346 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 32345 CCACCACTCTTTCCCC 32330 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| |||||||||||||| ||| |||| |||||||| || | Sbjct 39391 AATCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAACACAATTCATTCCAATGAGG 39332 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || |||| ||||||||||||||| Sbjct 39331 CCAACTGGCAAAGCTTCTGTTAAAAA 39306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||| | | ||| |||| ||| || || | || |||||| | | Sbjct 43121 TTTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTT-TCTGTCATAACTGCAAAA 43063 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| ||| Sbjct 43062 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTT 43003 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||||||||| || ||||||| Sbjct 43002 TCCATAAAATCAAAGGGATTTT 42981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429211281732978