Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq301931 113 4e-20 seq315083 98.7 9e-16 seq308646 98.7 9e-16 seq305640 93.3 4e-14 >seq301931 Length=702487 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||||||| |||| ||||||||| Sbjct 128561 GGTTACCTGGGTTGCCAAGCCTTGTCCGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 128620 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || || | || ||| |||| |||||||| ||||| ||||| |||||| Sbjct 128621 CCCCAAGCTGAGAACCATGACCCAGACGTCAAGGAGCACGTGAACTCCCTGGGGGAAAAG 128680 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | | | ||||| ||||| Sbjct 128681 CTGAAGACCCTCAGGATGAGGCTGCGGCGCTG 128712 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 129092 GCTGCAGGAACGAGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACAT 129151 ||| || || | |||||| ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 131063 GCTCCAAGAGCAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACAT 131122 Query 129152 AGAATCATACATGAC 129166 |||| | |||||||| Sbjct 131123 AGAAGCCTACATGAC 131137 >seq315083 Length=341198 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT 5374 || ||||| || || ||||| | || | ||| || || || || ||||| || || Sbjct 124906 ATTCGTTCACAAATGAGCTGCGTAATTCGGTCACCTTTTTTGACTTCAAACTCTTCTTTG 124965 Query 5375 CCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCG 5434 || || |||||||| || || || ||||| ||| || ||||| || | || ||||| Sbjct 124966 CCAAAATTAAACAGTACAACACCAACATTTCCTGTATAATCTTCATCTGTGACACCAGCT 125025 Query 5435 CCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAA 5494 || || || ||||||||||| | || | ||| |||||||| |||| | ||| || || Sbjct 125026 CCTACATCTATAAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGCTACTCTTCCATAACAC 125085 Query 5495 CCAGGTGGGAGCTTTATCAGAAGGTCAGT 5523 |||| || || |||| ||| ||| || Sbjct 125086 CCAGAAGGAAGAGCTATCTGAATGTCCGT 125114 >seq308646 Length=105333 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT 5374 || ||||| || || ||||| | || ||| | || || || ||||| || || Sbjct 84533 ATCCGTTCACAAATGAGCTGCACAATTTGGTCACTTTT-TTGACTTCAAACTCTTCTTTG 84475 Query 5375 CCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCG 5434 || || ||||||||||| || || ||||| |||| || ||||| || || || ||||| Sbjct 84474 CCAAAATTAAACAGCACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCT 84415 Query 5435 CCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAA 5494 || || || ||||||||||| | || | ||| |||||||| |||| | ||| || || Sbjct 84414 CCTACATCTATAAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGCTACTCTTCCATAACAC 84355 Query 5495 CCAGGTGGGAGCTTTATCAGAAGGTC 5520 |||| || || |||| ||| ||| Sbjct 84354 CCAGAAGGAAGAGCTATCTGAATGTC 84329 >seq305640 Length=1232121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 5320 TTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAA 5379 ||| || || ||||| || || || || ||||| || ||| | || || || || Sbjct 933162 TTCACAAATGAGCTGTGCAATTTGGTTACCTTTCTTGACTTCAGACTCTTCTTTGCCAAA 933103 Query 5380 GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCAC 5439 |||||||| || || || ||||| |||| || ||||| || || || ||||| || || Sbjct 933102 ATTAAACAGTACAACACCAACATTTCCTCTATAATCTTCTTCTATGACACCAGCTCCTAC 933043 Query 5440 GTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAG 5498 || ||||||||||| || || | ||| |||||||| ||| | ||| || || |||| Sbjct 933042 ATCTATAAAGTGTTTTACAGCCAAGCCAGAACGTGGAACTACTCTTCCATAACACCCAG 932984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445863193629680