Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq301931 140 4e-28 >seq301931 Length=702487 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||||||||||| || | Sbjct 128559 AGGGTTACCTGGGTTGCCAAGCCTTGTCCGAGATGATCCAGTTTTACCTGGAGGAGGTGA 128618 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| || ||||| || || ||||| ||| ||| |||||||||||||| ||||| || | Sbjct 128619 TGCCCCAAGCTGAGAACCATGACCCAGACGTCAAGGAGCACGTGAACTCCCTGGGGGAAA 128678 Query 10260 ATCTAAAGACCCTAAGG 10276 | || |||||||| ||| Sbjct 128679 AGCTGAAGACCCTCAGG 128695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || |||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 131062 AGCTCCAAGAGCAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 131121 Query 10419 TAGAAGCATACATGACCATGAA 10440 ||||||| |||||||| ||||| Sbjct 131122 TAGAAGCCTACATGACAATGAA 131143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545072071936640