Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq315408 179 5e-40 seq302530 120 4e-22 >seq315408 Length=2248345 Score = 179 bits (198), Expect = 5e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 9631 GTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCAC 9690 || ||||| |||| || || ||| |||||||||||| || |||| || || |||||| Sbjct 1254720 GTTGTCTGGAACAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTGAGCACGTCGCAC 1254661 Query 9691 ACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCA 9750 |||||||||||||||| |||||||| || || |||||||| |||||||||||||| ||| Sbjct 1254660 ACTCTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGCCCA 1254601 Query 9751 AAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATG 9810 || |||| || || ||||| | ||||| | ||| || || | || ||||||||||| Sbjct 1254600 AAGACCTCCTGCCCCACAGCAAACCGCATGTGTTCAGGGACATGAGGGGGATAGATCATC 1254541 Query 9811 TGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 | |||| ||||||||| | ||| ||||||| || || ||||| Sbjct 1254540 TCAGCCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAAT 1254494 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || ||| || ||| ||| | || Sbjct 1253588 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTTGCTTATGATCTGTCTTGAA 1253529 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || ||||| |||||||| Sbjct 1253528 AAACTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCACATTTGTGCCTTGGGGATC 1253469 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| || | |||||| ||||||||||| Sbjct 1253468 AGGGATGAACTCTCTTCTTAGAAGAAATTTTTCCACAA 1253431 Score = 91.5 bits (100), Expect = 2e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | |||||||| || || | Sbjct 1255301 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCC 1255242 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | | ||| || |||||||| | ||| | || |||| || || | ||| || | Sbjct 1255241 AATAATATCGAGTTGTTGTAGA-GAAACTGTTGATAGTTGTATTTCTGGTCATCGATTTG 1255183 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | ||| || | || | |||||||||||| | ||||||| || | | ||||| Sbjct 1255182 AAAAGTATCAGGTAGAAGGGGATGCCAGTGATAGAGTGTGTTAAATTCAGCAGCAATACG 1255123 Query 9501 ATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 ||||||||||| || | || |||||||| || | |||| || | ||||| Sbjct 1255122 GTTTTGGTACTGAAATTGTTGGCTGAAAAGCAGTTCTGGGTCAAACTTCAGTTTGAAGTG 1255063 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 |||||||| | || || ||||| Sbjct 1255062 ATAGCCGCTCAAGTGTTGTACATA 1255039 >seq302530 Length=775761 Score = 120 bits (132), Expect = 4e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 ||||| || | ||| |||| || || || || ||||| || |||||||| | || || Sbjct 38800 TTGACAATGCTAAAGCCCATCTCACCACCAAATGTGCTCGGCTTCCAGTACTCTGGAGAA 38859 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| ||| ||| || ||||||||||| |||||||| | ||| | || ||| Sbjct 38860 CAGATGGGGTTTCCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCGATCTCTATCATACTC 38919 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||||| ||| || || |||||| | | | || | || ||||||| Sbjct 38920 TCCCCAAAGATGGAGTTCGGTAGGCACTTTTCAAGAAGCAGCCCCGGATAGAACTCCAAG 38979 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || ||||||||||| || || || || || | || || ||||| |||||| Sbjct 38980 GCATCGATGTCTCCATATAGCTCCTCCAGCTCCACTGCCATCTCCTTCTCTCCT 39033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705538465390160