Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq301619 105 2e-17 seq303989 91.5 4e-13 >seq301619 Length=432943 Score = 105 bits (116), Expect = 2e-17 Identities = 327/503 (65%), Gaps = 6/503 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGA---TGAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || |||| | |||| || | | | | ||| Sbjct 188902 AAGAAGAAGGCAGATTGGGCCTTGCGTTGGACTGGGGACAAAGAGGCTACTTATGGAGAA 188843 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| || | || ||||||| || |||||||| | ||||||||| | ||| | || Sbjct 188842 CGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTGCTTTTCTGGTTCTTTTACATCGATA 188783 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||| | | | | ||||| || || || ||| | ||||| | |||||| Sbjct 188782 TTCTGGCTCAAGAAATGAGGACTGATGCCTGGCCTCACATTTCCCAATGAACTTATTAGC 188723 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 |||||||||| | || || ||||| || || ||| || || || | || || Sbjct 188722 AGAGATGAGGGCTTACACTGTGACTTTGCCTGCCTGATAT-TC--AAACACCTGATACAC 188666 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 |||| | | | | ||| || || || | ||||||||| | |||| Sbjct 188665 AAACCATCGGAGCAGAGAGTAAAAGAAATAATCATCAATGCAGTTAGGATAGAACAGGAG 188606 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 || | || || || || || | |||||||| || ||| | | ||||| | Sbjct 188605 TTCCTCACAGAAGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCATTTTAATGAAGCAA 188546 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 || || | ||||| || || | || | | ||| |||| | ||| || || Sbjct 188545 TACATCGAGTTTGTGGCTGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAAA 188486 Query 22852 GTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTC 22911 || | ||||||||||| | |||||| || |||||| ||||||| ||| || ||||| Sbjct 188485 GTAGAAAATCCATTTGACTTGATGGATAATACTTCACTGGAAGGAATGACTAACTTCTTT 188426 Query 22912 GAAAAAAGAGTTGGTGAATACCA 22934 || || ||||| || ||||| || Sbjct 188425 GAGAAGAGAGTAGGCGAATATCA 188403 >seq303989 Length=535067 Score = 91.5 bits (100), Expect = 4e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||||| || |||||||| ||||||||||| | ||| | Sbjct 320068 GAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCG 320127 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 320128 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATT 320187 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 320188 AGCAGAGATGAGG 320200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1297722807381798