Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq100879 86.0 5e-12 seq309042 84.2 2e-11 seq305757 84.2 2e-11 >seq100879 Length=438 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| | ||||| ||| ||| Sbjct 434 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCCAGT 375 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | || || ||||| || ||||||||||| ||||| || || Sbjct 374 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 315 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | |||||||| || ||||||| | | | | ||||| ||| Sbjct 314 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 255 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||| || || Sbjct 254 ATTCAGAAAGAGTCGAC 238 >seq309042 Length=1952097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| ||||| || ||||| ||||| || |||||||||| | ||||||||||| ||| Sbjct 293149 GACAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAA 293208 Query 24144 GAT-GACAGAAAC-GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGT 24201 ||| |||| | | ||| || || ||||||||||| || |||| |||| | |||| Sbjct 293209 GATGGACATATTCTGTC--TGACTACAACATTCAAAAGGAGCCTACTTTTCACCTTGTGT 293266 Query 24202 TAAGATT 24208 | ||||| Sbjct 293267 TGAGATT 293273 >seq305757 Length=1147529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || || || | || ||| | || || ||| | Sbjct 1142014 CAAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCC 1142073 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || || ||||||||| | || || ||||| || ||||||||||| ||||| || Sbjct 1142074 CAGTGATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGA 1142133 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | | |||||||| || ||||||| | | | | ||||| Sbjct 1142134 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 1142193 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||| || || Sbjct 1142194 CAACATCCAGAAAGAGTCAAC 1142214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428169181904295