Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq130668 122 7e-23 seq316040 102 7e-17 seq314340 102 7e-17 seq305757 95.1 1e-14 seq100879 93.3 3e-14 seq169768 91.5 1e-13 >seq130668 Length=27386 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 9817 CCCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 9758 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| |||| |||| |||||||| ||| | || |||| ||| ||||| ||| Sbjct 9757 CAGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGG 9698 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || ||||| ||| || | | | ||||||| |||||| Sbjct 9697 GATGCCCTCCTTGTCCTGGATCTTTGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCG 9640 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || || || |||||||| Sbjct 9639 ACCTCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9590 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 9589 CCCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 9530 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| |||| |||| |||||||| ||| | || |||| ||| ||||| ||| Sbjct 9529 CAGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGG 9470 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || ||||| ||| || | | | ||||||| |||||| Sbjct 9469 GATGCCTTCCTTGTCCTGGATCTTTGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCG 9412 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || || ||||| || || || || ||||||||| Sbjct 9411 ACCTCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATT 9361 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | || ||| ||||| Sbjct 10030 CAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT----GCGTC 9975 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| |||||||| ||| | || |||| ||| ||||| ||| | ||| || | Sbjct 9974 CATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCT 9915 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || ||||| ||| || | | | ||||||| |||||| |||| ||| Sbjct 9914 TGTCCTGGATCTTTGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGT 9857 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| || || || || |||||||| Sbjct 9856 GATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9818 >seq316040 Length=1005281 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 910480 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAA 910421 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| |||||||||||| | || || ||||| ||||| || Sbjct 910420 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGA 910361 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | | ||||| | ||||||| Sbjct 910360 ATGCCCTCCTTGTCTTGGATTTTAGCT--TTGACATTCTCGATGGTGTCACTGGGCTCCA 910303 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||| || || || || || || || | || |||||||| Sbjct 910302 CTTCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCATGAAGATCTGCAT 910254 >seq314340 Length=1169179 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 629759 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAA 629700 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| |||||||||||| | || || ||||| ||||| || Sbjct 629699 AGAGTGCAGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGG 629640 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGC-TTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| |||| | || || || | | | ||||| | |||||| Sbjct 629639 ATGCCCTCCTTGTCTTGGATTT-CAGCTTTGACATTCTCTATGGTGTCACTGGGCTCAAC 629581 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||| || || || || || || || || || |||||||| Sbjct 629580 TTCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 629533 >seq305757 Length=1147529 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || ||||| || || |||||||| || | Sbjct 1142244 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAA 1142185 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 1142184 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1142125 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | | || || | |||||| Sbjct 1142124 ATGCCTTCTTTATCCTGGATCTTGGC--CTTCACATTCTCGATGGTATCACTGGGCTCAA 1142067 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || |||||||| ||||| || || |||||||||||| Sbjct 1142066 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 1142014 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||| || | | || | | || Sbjct 1142457 AGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 1142398 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| |||| |||| ||| ||||| ||| | ||| ||||| || Sbjct 1142397 TCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 1142338 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | || || | ||||| ||| | |||||||| Sbjct 1142337 TGGATCTTAGC--CTTCACGTTTTCAATGGTATCACTAGGCTCAACTTCTAGGGTGATGG 1142280 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || |||||||||||||| Sbjct 1142279 TCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 >seq100879 Length=438 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||| || | | || | | || Sbjct 223 AGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 282 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || Sbjct 283 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 342 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | || || | |||||| ||| | |||||||| Sbjct 343 TGGATCTTGGC--CTTCACATTCTCGATGGTATCACTGGGCTCAACTTCTAGGGTGATGG 400 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || |||||||||||||| Sbjct 401 TCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 434 >seq169768 Length=302843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||| || | | || | | || Sbjct 108916 AGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 108975 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| |||| |||| ||| ||||| | ||| | ||| ||||| || Sbjct 108976 TCCAGCTGCTTGCCTGCAGAAATGAGCCTCTGCTGGTCGAGAGGGATGCCTTCTTTATCA 109035 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | || || | |||||| | | |||||||| Sbjct 109036 TGGATCTTGGC--CTTCACATTCTCAATGGTATCACTGGGCTCAACCTGTAGGGTGATGG 109093 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || | |||||| ||||| || || |||||||||||| Sbjct 109094 TCTTGCTGGTCAGGGTTTTCACGAAGATCTGCATTTTG 109131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403423294535110