Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq329917 127 1e-24 seq262306 127 1e-24 seq177319 127 1e-24 seq323257 122 6e-23 seq305757 113 3e-20 seq309836 104 2e-17 seq173032 104 2e-17 seq309042 102 5e-17 seq303727 102 5e-17 seq100879 98.7 7e-16 seq126465 96.9 2e-15 seq131556 95.1 8e-15 seq315922 84.2 1e-11 seq315406 84.2 1e-11 seq313901 84.2 1e-11 >seq329917 Length=379 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 101 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 160 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 161 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 195 >seq262306 Length=347 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 106 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 165 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 166 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 200 >seq177319 Length=311 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 61 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 120 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 121 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 155 >seq323257 Length=329 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||| ||||| || |||||||| Sbjct 68 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAAGTAGGGACAGTGGGAATCTCGT 127 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 128 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 162 >seq305757 Length=1147529 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| |||| || || || ||| || || || |||||||||| Sbjct 1142246 TACCACCTCTCAGACGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAG 1142187 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || ||||| || || | || || || | | Sbjct 1142186 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAG 1142127 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||| ||| || || ||||||||||| || ||||| | |||| Sbjct 1142126 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAA 1142067 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | |||| || || || || || |||| |||||||||||| |||||||| || Sbjct 1142066 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 1142015 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || ||||| ||||||||||| Sbjct 1142472 CCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 1142413 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || || | ||| Sbjct 1142412 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGAGGG 1142353 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || |||||| || | | ||||| | | |||||| Sbjct 1142352 ATGCCTTCTTTATCCTGGATCTTAGCCTTCACGTTTTCAATGGTATCACTAGGCTCAACT 1142293 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || |||| ||| ||||| || |||||||| Sbjct 1142292 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 >seq309836 Length=316219 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||| | ||||||||||||| Sbjct 223622 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGCTGGCTATCGGTCTCGT 223681 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 223682 GCCAGTATTTAGCCTTA 223698 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| |||||||||||| |||||||| ||||| | |||||| | Sbjct 221217 AAGCCCGTTCCCTTGGTTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTAGGAATCTCAT 221276 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| | ||||||||||||||||| Sbjct 221277 TCATCCATTCATGGGTGTCACTAATTAGATGAC 221309 >seq173032 Length=335 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 309 CTCTATCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTAGCTATCGGTCTCGT 250 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 249 GCCGGTATTTAGCCTTA 233 >seq309042 Length=1952097 Score = 102 bits (112), Expect = 5e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||| ||| |||||||||||| ||||| ||||||| || | || | || Sbjct 293268 CAACACAAGGTGAAAAGTAGGCTCCTTTTGAATGTTGTAGTCAGACAGAATATGTCCATC 293209 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| ||||| Sbjct 293208 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTGTC 293149 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || ||| ||| ||||| | | |||||| |||||| | | ||||| || Sbjct 293148 CTGGATCTTTGCCTTTACATTTTTTATAGTATCCAAGGGTTCAACCTTGAGAGTAATGGT 293089 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || | |||||||| |||||||||||| || Sbjct 293088 CTT-CTTGTAAGGGTTTTCATGAATATCTGCATCTT 293054 >seq303727 Length=1188818 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| ||||||||||| ||||| ||||||| | |||| | || Sbjct 949496 CAACACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATC 949437 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 949436 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 949377 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| || | || || || Sbjct 949376 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 949317 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||| ||| |||||||| || Sbjct 949316 CTTCCCCGTAAGGGTTTTCATGAAAATCTGCATCTT 949281 >seq100879 Length=438 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || ||||| ||||||||||| Sbjct 208 CCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 267 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || || | ||| Sbjct 268 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 327 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || ||||||||||| || ||||| | |||||| Sbjct 328 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACT 387 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || |||| ||| ||||| || |||||||| Sbjct 388 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 434 >seq126465 Length=199800 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| ||||||||||| ||||| ||||||| | |||| | || Sbjct 39084 CAACACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATC 39025 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 39024 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 38965 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| | | || || || Sbjct 38964 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGGGTGATGGT 38905 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||| ||| |||||||| || Sbjct 38904 CTTCCCCGTAAGGGTTTTCATGAAAATCTGCATCTT 38869 >seq131556 Length=230148 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||| ||||| ||||||| | || | | || Sbjct 29423 CAACACAACATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACATCCATC 29364 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 29363 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 29304 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || ||| ||||| | || || ||| | || ||| || | || || || Sbjct 29303 TTGGATCTTGGTCTTTACATTTTCTACTGTGTCTGGAGGTTGAACCTCGAGAGTGATGGT 29244 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316 || || || | |||||||| ||| ||||||| Sbjct 29243 CTTCCCGGTAAGGGTTTTCATGAAAATCTGCA 29212 >seq315922 Length=427858 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| || |||| |||||| ||||| ||||||| | |||| |||| Sbjct 363005 CAACACAAGATGAAGGGTAGATTCCTCTTGAATGTTGTAGTCAGACAGATTACGTCCGTC 362946 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 | | ||| || |||||||| |||| | || || || | || | ||||| ||||| Sbjct 362945 TTTCAGTTGCTTGCCGGCAAAGGTTAGTCTTTCCTGTTCAGGAGGAATTCCTTCCTTGTC 362886 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||| ||||||| | || || || Sbjct 362885 CTGGATCTTGGCCTTTACATTTTCTATTCTATCCAAGGTTTCAACATTGGGAGTGATGGT 362826 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | |||||||||||| |||||||| || Sbjct 362825 CTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 362790 >seq315406 Length=587182 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| ||||||||||| ||||| |||||| ||||| ||||||| | || | | || Sbjct 211851 CAACACAAAATGAAGAGTAGACTCCTGTTGAATGTTGTAGTCAGACAGAGTACATCCATC 211792 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| | ||| | || | | ||| || || Sbjct 211791 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAATCTGGAGGAATTCTTTCCTTATC 211732 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||| | || | || || || Sbjct 211731 CTGTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCCTCGAGAGTGATGGT 211672 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGC 38315 || ||| | | |||||||||||| |||||| Sbjct 211671 CTTCCCCATAAGGGTTTTCACGAAAATCTGC 211641 >seq313901 Length=677788 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||||||||||| |||||||| |||||| |||||| | Sbjct 31375 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTGTGGTACTTG---GCTATCAGTCTCGTGC 31319 Query 20009 TAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 31318 CAGTATTTAGCCTTA 31304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333570737517059