Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq130668 109 5e-19 seq302728 102 7e-17 seq316040 100 2e-16 seq311794 95.1 1e-14 seq314340 82.4 7e-11 >seq130668 Length=27386 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || ||||| |||| || || ||||||| | || || ||| | Sbjct 9359 ACAATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTGGAGGTCGAGCCC 9418 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | ||| ||| ||| ||||| ||||| || || |||||| Sbjct 9419 AGCGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCTGAC 9478 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||||||||| | ||||| | ||||| || || ||| Sbjct 9479 CAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 9538 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| ||||| || || | ||||| | || ||||| || Sbjct 9539 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGAGGGGG 9588 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||| | Sbjct 9818 ATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTGGAGGTCGAGCCCAGC 9877 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| ||||| ||||| || || |||||||| Sbjct 9878 GACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 9937 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| || || ||||| Sbjct 9938 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 9997 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || || || || || Sbjct 9998 ATCCAGAAAGAGTCCACCCTGCACTTGGTCCT 10029 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||| | Sbjct 9590 ATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTGGAGGTCGAGCCCAGC 9649 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| ||||| || || || || |||||||| Sbjct 9650 GACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 9709 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||| | ||||| || || ||||| Sbjct 9710 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 9769 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | ||||| | || ||||| || Sbjct 9770 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGAGGGGG 9816 >seq302728 Length=1132070 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 ||| || || || ||||| | || || || | ||||| | ||||| ||| | ||| Sbjct 601049 GCAGATCTTCGTGAAGACCCTCACAGGCAAGACAATCACCCTTGAAGTTGAGCCCAGTGA 600990 Query 25061 CACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| |||||| | || |||| |||| || ||||| || || || ||||||||||| Sbjct 600989 CACCATCGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGACCA 600933 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| |||||||| | || |||| ||||||| | || ||||| Sbjct 600932 GCAGCGTCTGATATTTGCAGGCAAACAGCTGGAGGATGGTCGCACTCTTTCAGAATACAA 600873 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | ||||| | || ||||| || Sbjct 600872 CATCCACAAAGAGTCCACCCTGCACCTGGTGCTGTGCCTGAGAGGTGG 600825 >seq316040 Length=1005281 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || | ||||| | || || || | ||||| | ||||||||| | | Sbjct 910254 ATGCAGATCTTCATGAAGACCCTCACGGGCAAGACAATCACCCTTGAAGTGGAGCCCAGT 910313 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| || ||||| || || |||||||||||| Sbjct 910314 GACACCATCGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATTCCACCTGAC 910370 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| |||||||| | || |||| |||||| | || ||| Sbjct 910371 CAGCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCAGACTAC 910430 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || | ||||| Sbjct 910431 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 910465 >seq311794 Length=553708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| ||||| ||||| |||| || | ||||||| | || || ||| | Sbjct 171328 ACAATGCAAATCTTTGTGAAGACCCTGACTGGCCAGACCATCACCCTGGAGGTCGAGCCC 171269 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || | || ||| | ||| ||| ||| ||||| ||||| || || |||||| Sbjct 171268 AGCAACGCCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGAC 171209 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||| ||||||| || ||||||| || ||| || | | | Sbjct 171208 CAGCAGAGGTTGATCTTTGCCAGCAAACAGTTGGAAGATGGACGTACTCTGTATAACTTC 171149 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || || || || || || Sbjct 171148 AACATCCAGAAAGAATCTACCCTGCACTTGGTCCT 171114 >seq314340 Length=1169179 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| | ||||| ||| | | Sbjct 629533 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACAATCACCCTTGAAGTTGAGCCCAGT 629592 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| ||| || ||||| || || || ||||||||| Sbjct 629593 GACACCATAGAG--AATGTCAAAGCTGAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 629649 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| |||||||| | || |||| ||||| | || ||| Sbjct 629650 CAGCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCTGCACTCTTTCAGACTAC 629709 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || | ||||| Sbjct 629710 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 629744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431547242511035