Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq301619 298 6e-76 seq117952 188 8e-43 seq289273 185 1e-41 seq301777 165 9e-36 seq303989 105 7e-18 >seq301619 Length=432943 Score = 298 bits (330), Expect = 6e-76 Identities = 536/777 (69%), Gaps = 7/777 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| ||||| ||||| || ||||| || ||| ||| |||||||| || | Sbjct 188517 ATAAGTCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAATG 188576 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || || || | ||| || | || || ||| || | | | Sbjct 188577 AGCTTCACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATT 188636 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| | | |||||| |||| | | ||| | || | ||| ||| Sbjct 188637 ATTTCTTTTACTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTGAATATCAGGCAGGCA 188696 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 ||||| ||||| || || |||| || || || | ||||| ||||| | || || Sbjct 188697 AAGTCACAGTGTAAGCCCTCATCTC-TGCTAATAAGTTCATTGGGAAATGTGAGGCCAGG 188755 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | |||||||| |||||||||||| ||||| || | |||| ||||||||| | || || Sbjct 188756 CATCAGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATGCC 188815 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || ||||| || |||| |||||| || || | || || | |||| Sbjct 188816 TTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCCCCAGTCCA 188875 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || ||||| | |||||| | || || || || || || || Sbjct 188876 ACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATTGAAGAG 188935 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | || | | ||| ||||| || || || | ||| ||||||||||| Sbjct 188936 AAATTCCCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGA 188995 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| || | || || Sbjct 188996 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAAC 189055 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| ||||| ||| || | |||||||| ||||| ||||| ||||||||| || Sbjct 189056 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGAA 189115 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGAT 93574 || || | | || |||||||| | |||| || ||| || ||||| | ||| Sbjct 189116 AGTCAGAACACGCGATATAAAATATCTCTCCACAGGTTTCAGGGATTCCCAGTGCCGG-- 189173 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 || ||||| | |||||| || ||||| | |||||||| || || || ||||| ||||| Sbjct 189174 AGGTCTTTGGTAAGATCAACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCTTTCGTGTAC 189233 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 || | ||| ||||| || || | || ||||| |||||||| || |||||| ||| Sbjct 189234 ATCTGCCAGATGTCATGGTACTCGATAGGAAAGATGACAAAGCGGCGAGGGTTTTCT 189290 >seq117952 Length=1479372 Score = 188 bits (208), Expect = 8e-43 Identities = 229/311 (74%), Gaps = 1/311 (0%) Strand=Plus/Plus Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 |||| |||||| ||||||| | || |||| ||||||||||| || |||||| | | || Sbjct 1360608 GAGACTACATTCCAGAATGTATGTTTTCCACAGCAATTTGGAAGCCATAGAAATAGCGAG 1360667 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 |||| || | || ||||||||| ||||| ||| || || |||||||| ||||| |||| Sbjct 1360668 CTTCTGTAACTTGAACTTCTTGACTAAATCACTCCACAAG-TTTTCATTTACTATGCCAT 1360726 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 || ||||||||| ||||||| | |||| |||||||| | |||| ||| || || Sbjct 1360727 CGCTTGCTGCAAAGAAAGCCACAACATGCGATATAAAATCTCTCTCCTCAGGCTTCAGGG 1360786 Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 ||||| | || || || |||||||| || | ||| |||||||| || || | Sbjct 1360787 CTTCCCAGTGCTGGAGGTCCTTGGAAAGATCAACCTTCTCGGTTGTCCAAAAGGAGGCCT 1360846 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 | ||||| || ||||| | ||| ||||| || |||| || ||||| |||||||| || Sbjct 1360847 CAGCTTTCTTATACATCTGCCAAATGTCATGGTATTCCATAGGAAAGATGACAAAGCGGC 1360906 Query 93681 TAGGGTTATCT 93691 ||||| ||| Sbjct 1360907 GGGGGTTTTCT 1360917 Score = 109 bits (120), Expect = 6e-19 Identities = 222/326 (68%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| |||||| || ||||| || ||||| || ||| || |||||||| || | Sbjct 1359960 ATAAGTCTATCGGCCACAAACTCGATGTATTGCTTCATTAAGATGCAATTCATCCCAATG 1360019 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || ||||| ||| || | || || || || | | | Sbjct 1360020 AGCTTCACAGGCAAGGCCTCGGTGGGGAACTCCTGTTCTATCCTGACAGCATTGATGATT 1360079 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| | |||||| ||| | | ||| |||| | ||| ||| Sbjct 1360080 ATTTCTTTTACTCTTTGCTCCAATGGTTTGTGTGTCAGGTGTTTGAACATCAGGCAGGCA 1360139 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 ||||| |||||||| || ||| || || || | || || ||||| | ||| || Sbjct 1360140 AAGTCACAGTGTAAACCCTCAACTC-TGTTAATAAGTTCACTGGAAAATGTGAGACCAGG 1360198 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||| ||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 1360199 CATCAGTCCTTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 1360258 Query 93217 TTCCACGGCTGCAAATGCCACAATAC 93242 ||||| || ||||| || |||| || Sbjct 1360259 TTCCATTGCAGCAAAGGCTACAACAC 1360284 >seq289273 Length=322959 Score = 185 bits (204), Expect = 1e-41 Identities = 291/417 (70%), Gaps = 0/417 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| || | | | ||||||| |||||||||| || ||||| || ||| Sbjct 72679 TCATTGGAAAATGTAAAGCTTCACATCAGTCCTTGTTTCTTGAGGCAGAATATCGATGCA 72738 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 ||| |||| |||| || || ||||| || || ||||| || |||| || ||| ||||| Sbjct 72739 AAAGAACCAAAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACATTCTCCAAAA 72798 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 | || || | | ||||| ||| |||||||| || |||||||| | |||||| Sbjct 72799 GTAGCCTCTTTGTTCCCAATCCAACCTAAGGCCCAATCTGCCTTTTTCTTGACACAAGGC 72858 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 | || | || | ||| || || | | | || | | ||| ||||| | || Sbjct 72859 AACGTCTTAATGGTGTTGAAGAGAAATTTCCTTTCTTTGCAGTCTTTAATGTAAATGTCA 72918 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 || | ||| || |||||||||| | | ||||| |||||||||||||| |||||| Sbjct 72919 ATAAGGAGACTGTATATTTCAGAATATATGTGTTCCATGGCAATTTGGAATCCATAGAAA 72978 Query 93434 CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACT 93493 | | ||||| | || || |||||||| ||||| |||||| | ||||||| ||| Sbjct 72979 TAGCAGGCTTCTATAATTTGAACTTCTTGGCTAAATCACTCTACCAAGCTTTCATTTACT 73038 Query 93494 ATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 || ||||| ||||||||| ||||||| | ||| |||||||| | | || ||| Sbjct 73039 ATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGTGATATAAAATATCTTTCCTCA 73095 >seq301777 Length=185553 Score = 165 bits (182), Expect = 9e-36 Identities = 441/670 (66%), Gaps = 32/670 (5%) Strand=Plus/Minus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| | || ||||| |||| | | ||| | || | ||| ||| Sbjct 170105 ATTTCTTTTACTCTCTGCTGTGACGGTTTGTGTATCAGGTGTTTGAATATCAGGCAGGCA 170046 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCG--TGATA--TCAACTCATTGCTGAATGTTAAACC 93153 ||||| ||||||| || |||| | ||| | | ||| || |||| | || Sbjct 170045 AAGTCACAGTGTAAACTCTCATCTCTGCTAATAAGTTAGTTCACTGGAACATGTGAGGCC 169986 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | || |||| ||||||||||||| ||||| | ||||| ||||||||| || || Sbjct 169985 AGGCATCATTCCTTGTTTCTTGAGCCAGAATATCAATACAAAAGAACCAGAAAAGAAGAT 169926 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAA-AATTTGCGGAATTACTGCTGA 93272 ||| |||| || ||||| || |||| | | || || || | || || | |||| Sbjct 169925 GCCTCCCACTGCAGCAAAGGCTACAACATGCTCTCCATTAAGTAGCCTCCTTG-TCCTGA 169867 Query 93273 -TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 |||| | || |||||| || || || || | ||| || | || || || ||||| Sbjct 169866 ATCCAATGCAAGGCCCAACTTGCCTTCTTTTTGACACAGGGCATCGTCTCAATGGCGTTG 169807 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 | | ||| || ||| | || ||| ||||| || || || | ||| ||||| Sbjct 169806 ATGA--TAAATTCCCTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTGCACATT 169749 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 |||||||| | || ||||| ||||||||||| || |||||||| ||||| || | Sbjct 169748 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAACT 169689 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 || |||||||| ||||| ||| || | |||||||| ||||| ||||| ||| || Sbjct 169688 TGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTTGCAACA 169629 Query 93512 aaaaaaGCC--AATATATG----CTT-----------------TATAAAATGTTTCTCAT 93548 || | | | | || ||| ||| |||||||| | || | Sbjct 169628 AACGATGGCATAGTAAATGAAAACTTGGTGACATAAAATATGATATAAAATATCGATCCT 169569 Query 93549 CATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCC 93608 || || || ||||| | ||| || || |||||||| || || ||| | |||| Sbjct 169568 CAGGCTTCAGGGCTTCCCAGTGCCGTAGGTCCTTGGAAAGATCAACCTCCTCGGCTGTCC 169509 Query 93609 AAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATA 93668 | || | || || ||||| || |||| | ||| ||||| ||||||| || ||||| | Sbjct 169508 AGAAGTAGGCCTCAGCTTTCTTAAACATCTGCCAAATGTCATGATATTCGATAGGAAAGA 169449 Query 93669 TGACAAAACG 93678 ||||||| || Sbjct 169448 TGACAAAGCG 169439 >seq303989 Length=535067 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 320180 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 320121 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || |||| |||||| Sbjct 320120 AAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 320068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554513708296360