Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq303727 93.3 3e-14 seq306752 91.5 1e-13 seq126465 87.8 1e-12 seq308087 82.4 5e-11 seq131556 82.4 5e-11 seq92613 82.4 5e-11 >seq303727 Length=1188818 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || || || ||||| | ||||| || ||||| ||| | || ||| | Sbjct 949280 CAAGATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 949339 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | || | ||| || || ||||| || || | ||| | Sbjct 949340 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 949399 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 949400 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTA 949459 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||| |||||||||||||||||| | || || Sbjct 949460 CAACATTCAAAAGGAATCTACTCTTCATCTTGTGTT 949495 >seq306752 Length=244776 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || || || ||||| | ||||| || ||||| || | || ||| | Sbjct 146964 CAAGATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACC 147023 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | || | ||| || || ||||| || || | ||| | Sbjct 147024 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 147083 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| || ||||| |||||||||||||| ||||| |||||| | | ||| || | || || Sbjct 147084 CCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTCTGTCTGACTA 147143 Query 22010 CAATATTCAGAAGGAATCTACTCTTCAT 22037 ||| ||||| ||| |||||||||||||| Sbjct 147144 CAACATTCAAAAGAAATCTACTCTTCAT 147171 >seq126465 Length=199800 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || || || ||||| | ||||| || ||||| ||| | | ||| | Sbjct 38868 CAAGATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCAAGGTTGAACC 38927 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | || | ||| || || ||||| || || | ||| | Sbjct 38928 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 38987 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 38988 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTA 39047 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||| |||||||||||||||||| | || || Sbjct 39048 CAACATTCAAAAGGAATCTACTCTTCATCTTGTGTT 39083 >seq308087 Length=671593 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||||||||||||| ||||| |||||| | | ||| || | || ||| Sbjct 466440 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTCTGTCTGACTAC 466381 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||| ||| | |||||||||||| | || || Sbjct 466380 AACATTCACAAGAAGTCTACTCTTCATCTTGTGTT 466346 >seq131556 Length=230148 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 29328 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTCTGTCTGACTAC 29387 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||| ||||| |||||||||||| | || || Sbjct 29388 AACATTCAAAAGGAGTCTACTCTTCATGTTGTGTT 29422 >seq92613 Length=686304 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||||||||||||| |||| |||||| | | ||| || | || ||| Sbjct 590031 CAGCAAAGACTGATCTTTGCTGGCAAGAAACTGGAAGATGGACATACTCTGTCTGACTAC 590090 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||| ||||| |||||||||||| | || || Sbjct 590091 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 590125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356653089379906