Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq303727 118 9e-22 seq126465 114 1e-20 seq131556 107 2e-18 seq305757 104 2e-17 seq100879 104 2e-17 seq306752 100 2e-16 seq315491 98.7 8e-16 seq311794 89.7 4e-13 seq315406 87.8 2e-12 seq288811 86.0 5e-12 seq130601 82.4 6e-11 >seq303727 Length=1188818 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | |||||||| |||||||||||||| || Sbjct 949511 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGA 949452 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 949451 CAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 949392 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 949391 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 949332 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| | ||||||||||| Sbjct 949331 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 949284 >seq126465 Length=199800 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | |||||||| |||||||||||||| || Sbjct 39099 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGA 39040 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 39039 CAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 38980 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 38979 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 38920 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | ||| | || || || || || ||||| | ||||||||||| Sbjct 38919 CTTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 38872 >seq131556 Length=230148 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 29438 ACCACCACGAAGTCTCAACACAACATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 29379 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 29378 CAGAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 29319 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| || ||||| | | || || Sbjct 29318 AATTCCTTCCTTATCTTGGATCTTGGTCTTTACATTTTCTACTGTGTCTGGAGGTTGAAC 29259 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 114381 || | || | || || ||||| || ||||| | |||||||||| Sbjct 29258 CTCGAGAGTGATGGTCTTCCCGGTAAGGGTTTTCATGAAAATCTGCA 29212 >seq305757 Length=1147529 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| |||||||||||||| | ||| || |||||| || || || || Sbjct 1142442 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1142383 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | ||||| | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 1142382 GCAAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTC 1142323 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||| || | | || || || | ||| | || ||||||||||| || Sbjct 1142322 ACGTTTTCAATGGTATCACTAGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 1142263 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 1142262 TTCACAAAAATCTGCAT 1142246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 1142214 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1142155 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 1142154 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 1142095 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || ||| || || || | ||| | || ||||||||||| ||| Sbjct 1142094 ACATTCTCGATGGTATCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTT 1142035 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1142034 TTCACGAAGATCTGCAT 1142018 >seq100879 Length=438 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| |||||||||||||| | ||| || |||||| || || || || Sbjct 238 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 297 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 298 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 357 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || ||| || || || | ||| | || ||||||||||| || Sbjct 358 ACATTCTCGATGGTATCACTGGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 417 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 418 TTCACAAAAATCTGCAT 434 >seq306752 Length=244776 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||| || | ||| | ||||||| |||||||||||||| || Sbjct 147195 ACCACCACGACGTCTCAGCACAAGATGAAGAGTAGATTTCTTTTGAATGTTGTAGTCAGA 147136 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| ||||| || ||||| |||| || | || ||||| ||||| Sbjct 147135 CAGAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 147076 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 147075 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 147016 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || ||||| | ||||||||||| Sbjct 147015 CTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 146968 >seq315491 Length=2321803 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 |||| |||||||| || | | | | ||||| || |||||||||||||| || | | Sbjct 1833753 CCACAAAGTCTCAACACAAGAAGAAGAGTAGACTCCTTTTGAATGTTGTAGTCATATAGA 1833694 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| ||||| || ||||| |||| || | || || || ||||||| Sbjct 1833693 GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTTTGCTGATCAAGAGGAATT 1833634 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 |||| || || ||||| |||| | ||| | || || | |||||| || || Sbjct 1833633 TCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCTGAGGATTCAACCTCA 1833574 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || || | || ||||| || |||||||||||||| Sbjct 1833573 AGAGTGACTGTCTTCTCTGTAAGAGTATTCACAAAAATCTGCAT 1833530 >seq311794 Length=553708 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| || |||||| | | || |||||| |||||| | ||||| | Sbjct 171129 GTAGATTCTTTCTGGATGTTGAAGTTATACAGAGTACGTCCATCTTCCAACTGTTTGCTG 171188 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| |||||||| ||||| |||||| || Sbjct 171189 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTG 171248 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | ||| ||||| |||| ||| | || | ||| ||||| || Sbjct 171249 ACATTCTCAATGGCGTTGCTGGGCTCGACCTCCAGGGTGATGGTCTGGCCAGTCAGGGTC 171308 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 171309 TTCACAAAGATTTGCAT 171325 >seq315406 Length=587182 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || ||||| | ||||| || | |||||||||||| || Sbjct 211866 ACCACCACGAAGTCTCAACACAAAATGAAGAGTAGACTCCTGTTGAATGTTGTAGTCAGA 211807 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| || ||||| |||| || | || | || ||||| Sbjct 211806 CAGAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAATCTGGAGG 211747 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| | ||| || || ||||| |||| | ||| | || || | || ||| | Sbjct 211746 AATTCTTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGC 211687 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 114380 || | || | || || || | || ||||| || ||||||||| Sbjct 211686 CTCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGC 211641 >seq288811 Length=106209 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 114161 ACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGT 114220 ||| |||||||| || ||||| | | ||| || ||||||||| |||| || || || Sbjct 41900 ACGAAGTCTCAACACAAAATGAAGGGCAGACTCCTTTTGAATGCTGTAGTCAGACAGTGT 41959 Query 114221 ACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCC 114280 ||| |||||| ||||| || ||||| |||| | || || || |||||||| || Sbjct 41960 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATTTGTTTTTGCTGATCAGGAGGAATTCC 42019 Query 114281 TTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCAC 114340 ||||| | | | |||| |||| ||||| | || || | || ||| || || Sbjct 42020 TTCTTATCCTGGA-TCTTGGCCTTTACATGTTCTATTGTATCCGAGGGTTCAACCTCAGG 42078 Query 114341 GGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || || || ||||| | ||||||||||| Sbjct 42079 AGTGACAGTCTTCCCTGTAAGGGTTTTCATGAAAATCTGCAT 42120 >seq130601 Length=139167 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||| ||| || | ||| | ||||| || |||| ||||||| | || || |||||| Sbjct 8484 AGTCACAACACAAGATGAAGAGTAGACTCCTTTTAAATGTTGCAGTCAGACAGAGTACGT 8543 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | || || ||||| || | || | ||||| || |||||||| ||||| Sbjct 8544 CCATCTTCCACCTGCTTGCCAGCAAAGGTTAGTCTTTGTTGATCAGGAGGAATTCCTTCC 8603 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 || || ||||| |||| | ||| || || | | || ||| || || | || Sbjct 8604 TTATCCTGTATCTTGGCCTTTACATATTCTACTGTATTCGAGGGTTCAACCTCAAGAGTG 8663 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || || || ||||| |||||||||||||| Sbjct 8664 ATGGTCCTCCCAGTGAGGGTTTTCACAAAAATCTGCAT 8701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418407861490668