Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq301619 147 4e-30 seq301777 102 2e-16 seq117952 87.8 3e-12 seq96983 84.2 4e-11 >seq301619 Length=432943 Score = 147 bits (162), Expect = 4e-30 Identities = 445/676 (66%), Gaps = 25/676 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| ||||||||| ||||||| ||| || || |||| ||||| || Sbjct 189259 ATCGAGTACCATGACATCTGGCAGATGTACACGAAAGCTGAGGCCTCCTTTTGGACAGCT 189200 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGC--TGGGAGTCACTGT---CTGAGAACG 42399 || ||| |||| || |||| ||| ||||| ||||| || ||| ||| | | | Sbjct 189199 GAAGAGGTTGATCTTACCAAAGACCT--CCGGCACTGGGAATCCCTGAAACCTGTGGA-G 189143 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | ||| | ||||| || || || |||||||| |||| Sbjct 189142 AGATATTTTATATCGCGTG--TTCTGACTTTCTTTGCAGCAAGAGATGGCATAGTAAATG 189085 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | ||| ||| | || | |||| || || ||| || || ||||| ||||| Sbjct 189084 AAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACA--GAAGCCCGCTGTTTCTA 189027 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 |||||||| || ||||| || ||| | || ||||| ||||| | || || | | Sbjct 189026 TGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAC---AGTCTCCTTATTGA 188970 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| ||||| || ||| || | | || ||||| ||||| ||||||||||| Sbjct 188969 CACTTACATTAAAGACCCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCC 188910 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 || ||||||||||||| || ||||| | |||| | | || || || | Sbjct 188909 TTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTGGACTGGGGACAAAGAGGCTACTTA 188850 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || || | | ||||||||| | || || || ||||||| ||| || || | || | Sbjct 188849 TGGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTGCTTTTCTGGTTCTTTTAC 188790 Query 42755 CTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 || || |||||||||||| | ||| | |||||| || ||||| || | || |||| Sbjct 188789 ATCGATATTCTGGCTCAAGAAATGAGGACT-GATGCCTGGCCTCACATTTCCCAATGAAC 188731 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | || ||||| || ||||| | || | |||||||||||||| | ||| | |||| Sbjct 188730 TTATTAGCAGAGATGAGGGCTTACACTGTGACTTTGCCTGCCTGATATTC---AAACACC 188674 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | | ||||| || ||| || || | || | || |||| | || || ||| | Sbjct 188673 TGATACACAAACCATCGGAGCAGAGAGTAAAAGAAATAATCATCAATGCAGTTAGGATAG 188614 Query 42934 AGAAGGAGTTCCTCAC 42949 | ||||||||||||| Sbjct 188613 AACAGGAGTTCCTCAC 188598 >seq301777 Length=185553 Score = 102 bits (112), Expect = 2e-16 Identities = 242/360 (67%), Gaps = 12/360 (3%) Strand=Plus/Plus Query 42613 TCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGA 42672 |||| ||||| |||||||||||||| |||| |||||||| ||||| | | |||| Sbjct 169806 TCAACGCCATTGAGACGATGCCCTGTGTCAAAAAGAAGGCAAGTTGGGCCTTGCATTGGA 169865 Query 42673 TCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTG--GTAGCCTTTACCGCCGTCGAGGG 42730 | || || || || || ||||| || ||||||||| | || || | || Sbjct 169866 TTCAGGACAAGGAGGCTAC-TTAATGGAGAGCATGTTGTAGCCTTTGCTGCAGTGGGAGG 169924 Query 42731 CATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGC 42789 ||||||||| || || | || | | || |||||||||||| | |||| | ||||| Sbjct 169925 CATCTTCTTTTCTGGTTCTTTTGTATTGATATTCTGGCTCAAGAAACAAGGAAT-GATGC 169983 Query 42790 CCGGACTCACCTTCTC----GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 | || ||||| | || |||| |||| || ||||| || ||| | | || | ||| Sbjct 169984 CTGGCCTCACATGTTCCAGTGAACTAACTTATTAGCAGAGATGAGAGTTTACACTGTGAC 170043 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGG 42905 ||||||||||| | ||| | ||||| | ||||| || || || || | || Sbjct 170044 TTTGCCTGCCTGATATTC---AAACACCTGATACACAAACCGTCACAGCAGAGAGTAAAA 170100 Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 | || |||| | || || ||| || ||||||||||||| || | ||||| ||| Sbjct 170101 GAAATAATCATCAATGCTGTTAGGATAGAACAGGAGTTCCTCACCTAGGCCCTGCCTGTG 170160 >seq117952 Length=1479372 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || | || ||||||||||| || || | || || || || |||||| Sbjct 1360279 GTAGCCTTTGCTGCAATGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 1360220 Query 42768 CTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | |||| | |||||| || ||||| || || | ||||| || | ||| | Sbjct 1360219 CTCAAGAAACAAGGACT-GATGCCTGGTCTCACATTTTCCAGTGAACTTATTAACAGAGT 1360161 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 ||||| | || | |||||||||||||| ||||| Sbjct 1360160 TGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTC 1360124 >seq96983 Length=126056 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || ||||||||||| | || || | || |||| Sbjct 32340 TGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCT 32399 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| | ||||| || ||||| || || || |||||||||||||| Sbjct 32400 GGCTAAAGAAGAGAGGTCT-TATGCCTGGGCTCACTTTTTCCAATGAACTCATCAGCAGA 32458 Query 42825 GACGA 42829 || || Sbjct 32459 GATGA 32463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940358940118640