Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq316040 113 5e-20 seq314340 104 3e-17 seq302728 104 3e-17 seq305118 93.3 5e-14 seq289401 91.5 2e-13 seq74267 91.5 2e-13 seq316492 89.7 6e-13 seq145686 89.7 6e-13 seq133091 89.7 6e-13 >seq316040 Length=1005281 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 910468 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGAGTGCGGCCA 910409 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || || ||||| || ||||||||||| | ||| | || ||||||| Sbjct 910408 TCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTG 910349 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || |||||| ||||| || | | ||||| || | ||||| || | ||||| Sbjct 910348 TCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCAAGGGTGATT 910289 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || ||||| | ||||| ||||| Sbjct 910288 GTCTTGCCCGTGAGGGTCTTCATGAAGATCTGCAT 910254 >seq314340 Length=1169179 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| ||| || || || ||||| || | ||||| | | Sbjct 629747 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGAGTGCAGCCA 629688 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || || ||||| || ||||||||||| | ||| | || ||||||| Sbjct 629687 TCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 629628 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||||| ||||| || | | ||||| || | || || || | ||||| Sbjct 629627 TCTTGGATTTCAGCTTTGACATTCTCTATGGTGTCACTGGGCTCAACTTCAAGGGTGATT 629568 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || ||||| || ||||| ||||| Sbjct 629567 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 629533 >seq302728 Length=1132070 Score = 104 bits (114), Expect = 3e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | | || ||||| |||| ||| ||| || || || ||||| || | Sbjct 600825 CCACCTCTCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTATTCTGAA 600884 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| || || || ||||| || ||||||||||| | ||| Sbjct 600885 AGAGTGCGACCATCCTCCAGCTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGTGGG 600944 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 600945 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACT 601004 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 42206 || | ||||| || ||||| || || ||||| || ||||| ||| Sbjct 601005 TCAAGGGTGATTGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGC 601049 >seq305118 Length=991007 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 196070 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 196129 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 196130 TACTAACGAGGACTGA 196145 >seq289401 Length=346727 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 34399 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 34458 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 34459 ATACTAACGAGGA 34471 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 82655 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 82714 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 82715 ATACTAACGAGGA 82727 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 44279 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 44338 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 44339 TACTAACGAGGAT 44351 >seq74267 Length=310618 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 100459 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 100518 Query 57067 TACTACCGAGG-ATTGA 57082 ||||| ||||| ||||| Sbjct 100519 TACTAACGAGGAATTGA 100535 >seq316492 Length=437314 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 419681 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 419740 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 419741 TACTAACGAGGA 419752 >seq145686 Length=4786 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 466 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 407 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 406 TACTAACGAGGA 395 >seq133091 Length=491 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 121 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 180 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 181 TACTAACGAGGA 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540923232739760