Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq130668 104 2e-17 >seq130668 Length=27386 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | || | | | ||||| || || ||||||||||| | Sbjct 9588 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9529 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| || || ||||| |||| | |||| || | ||| ||||| ||||| Sbjct 9528 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9469 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | ||||||| | | ||| ||| Sbjct 9468 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9409 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || || || |||||||| Sbjct 9408 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9362 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | || | | | ||||| || || ||||||||||| | Sbjct 9816 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9757 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| || || ||||| |||| | |||| || | ||| ||||| ||||| Sbjct 9756 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9697 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| ||| || | | || | ||||||| | | ||| ||| Sbjct 9696 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9637 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || || || |||||||| Sbjct 9636 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9590 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||||| || || || | | | ||||| || || ||||||||||| | Sbjct 10044 CCCCCCCTCAAACGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9985 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| | |||| || | ||| ||||| ||||| Sbjct 9984 AGGGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9925 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | ||||||| | | ||| ||| Sbjct 9924 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9865 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || || || |||||||| Sbjct 9864 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494170722220080