Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq303727 100 2e-16 seq126465 95.1 9e-15 seq131556 87.8 1e-12 seq306752 86.0 4e-12 >seq303727 Length=1188818 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 949510 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 949451 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 949450 AGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 949391 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 949390 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 949331 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| | ||||| ||||| || Sbjct 949330 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATCTT 949281 >seq126465 Length=199800 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 39098 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 39039 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 39038 AGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 38979 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 38978 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 38919 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | ||| ||||| || || || || ||||| | ||||| ||||| || Sbjct 38918 TTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATCTT 38869 >seq131556 Length=230148 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 29437 CCACCACGAAGTCTCAACACAACATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 29378 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 29377 AGAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 29318 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| | |||||| |||||| || || | || || Sbjct 29317 ATTCCTTCCTTATCTTGGATCTTGGTCTTTACATTTTCTACTGTGTCTGGAGGTTGAACC 29258 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA 15175 || | || ||||| || || || || ||||| | ||||| |||| Sbjct 29257 TCGAGAGTGATGGTCTTCCCGGTAAGGGTTTTCATGAAAATCTGCA 29212 >seq306752 Length=244776 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || ||| | || | |||||| ||||| | ||||| |||||||| || Sbjct 147194 CCACCACGACGTCTCAGCACAAGATGAAGAGTAGATTTCTTTTGAATGTTGTAGTCAGAC 147135 Query 15010 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | || | ||||| | ||| |||||||| | |||| | || ||||| || Sbjct 147134 AGAGTATGTC-CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 147076 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 147075 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 147016 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || || ||||| | ||||| ||||| || Sbjct 147015 CTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATCTT 146965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355923300814865