Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq303727 86.0 6e-12 seq316284 82.4 7e-11 >seq303727 Length=1188818 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || |||||||| ||||| || || ||||||||||| || || || | | | Sbjct 949510 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGT--CAG 949453 Query 45174 ACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| |||| ||| || || || | |||| || |||||| || || | Sbjct 949452 ACAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 949393 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| ||||| ||||| || || || || | ||||| || || || | || | Sbjct 949392 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAA 949333 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| || | || || || || || ||||| | ||||| |||||| Sbjct 949332 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATC 949283 >seq316284 Length=490044 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || || |||||||||||||||||||| ||||| || |||||| ||| ||| Sbjct 81605 GAGACAGGTACTCCGTACATGCTCTACAAAGATGCCTGTAATCGGAAAAGCAACCAGCAG 81546 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 ||| | ||||| || ||||| || ||||| || | ||||| || || || Sbjct 81545 AACATAGGAACCATCAAATGCAGCAATCTGTGTACAGAAATCATAGAGTA 81496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450098068662440