Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq315408 176 6e-39 seq302530 109 8e-19 >seq315408 Length=2248345 Score = 176 bits (194), Expect = 6e-39 Identities = 210/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| || ||||| || |||||||| |||||||| | || || || | ||| Sbjct 1256357 AAGGGACAGCCTTTCACGTTATTGCAAATGAGAGACTGAATCGAGGCAGTGTTGATGATT 1256298 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || ||||| || |||||||| || || || || || | Sbjct 1256297 TTAAAACCTACTTCTCCACCAAAAGTGCTCGGCTTCCAGTAGGCAGGAGAACATATAGCA 1256238 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||| ||||||| || || || || || || | ||| ||||||| || Sbjct 1256237 TTACCCATAAGTCCTCTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAT 1256178 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | | ||| ||| || || | || || | | Sbjct 1256177 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGGTACAGCTCCATGGCATCAATG 1256118 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||||||||||||||| || ||||| || |||||||||||| Sbjct 1256117 TCACCATAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCT 1256073 Score = 168 bits (186), Expect = 1e-36 Identities = 182/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 ||||| | || || || ||||||||||| ||| ||||||| || || || |||||||| Sbjct 1254729 ATTAGCCTGGTTGTCTGGAACAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTGAGC 1254670 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || ||||| || ||||||||||| | |||||| || ||||| |||||||| | ||| ||| Sbjct 1254669 ACGTCGCACACTCTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGC 1254610 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | ||||| || || | |||||| ||||| |||| | || || || | || | | Sbjct 1254609 ACCAGCCCAAAGACCTCCTGCCCCACAGCAAACCGCATGTGTTCAGGGACATGAGGGGGA 1254550 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || |||||||| ||||| ||||||| || || ||||| ||| Sbjct 1254549 TAGATCATCTCAGCCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACC 1254490 Query 9967 T 9967 | Sbjct 1254489 T 1254489 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| |||||| || ||| ||| | || Sbjct 1253588 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTTGCTTATGATCTGTCTTGAA 1253529 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || ||||| ||||| || | || || || ||||||| || ||||| |||||||| Sbjct 1253528 AAACTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCACATTTGTGCCTTGGGGATC 1253469 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || || | | || || ||| |||||||||| | ||||||| || || | Sbjct 1253468 AGGGATGAACTCTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCTGGAAGCTG 1253409 Query 10301 CGCCTTACCT 10310 | ||| ||| Sbjct 1253408 CTTCTTCCCT 1253399 Score = 96.9 bits (106), Expect = 5e-15 Identities = 176/256 (69%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || ||||| |||||||| || |||| | ||| || | | | || Sbjct 1255292 CCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCCAATAATATC 1255233 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || || ||| ||| | || ||||| |||| Sbjct 1255232 GAGTTGTTGTAGAGAAACTGTTGATAGTTGTATTTCTGGTCATCGATTTGAAAAGTATCA 1255173 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 || | || | ||||||| | ||||| || || || || || || || ||||| |||||| Sbjct 1255172 GGTAGAAGGGGATGCCAGTGATAGAGTGTGTTAAATTCAGCAGCAATACGGTTTTGGTAC 1255113 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 ||||| | || | ||| || | || |||||||| | || | |||||| || |||| Sbjct 1255112 TGAAATTGTTGG--CTGAAAAGCAGTTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCGC 1255055 Query 9674 TGAGTTGCTGGACATA 9689 | | || || ||||| Sbjct 1255054 TCAAGTGTTGTACATA 1255039 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| |||||||| ||| || ||||| || ||| ||| Sbjct 1252986 TCACCTTTCACACCCATGGGAGTTGGGCAGTCCTCAGGCACAGGAGGAAGGACTCTGGTA 1252927 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATA 10490 |||||||| || || || || || |||||| | ||||||||||| Sbjct 1252926 TAATAGGAAAGGTTGGAGAAGGCCTCCCAGTTTTTGTAGCCATA 1252883 >seq302530 Length=775761 Score = 109 bits (120), Expect = 8e-19 Identities = 179/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 8932 GGTTGCGGTTTTCACGATGTCTAAA-CCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGT 8990 ||| || || || || ||| ||||| || | || || || || ||||| || ||||||| Sbjct 38790 GGTGGCCGTGTTGACAATG-CTAAAGCCCATCTCACCACCAAATGTGCTCGGCTTCCAGT 38848 Query 8991 ACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCT 9050 || | || || |||||| ||| ||| ||| || || | |||||| |||||||| | || Sbjct 38849 ACTCTGGAGAACAGATGGGGTTTCCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCGATCT 38908 Query 9051 CGATGATGCTCTCACCGAAGATGGCAC-CGGGACGCGGTTTTTCGACGATGAAGCCAGTG 9109 | || || ||||| || ||||||| ||| | || |||| | || | |||| | Sbjct 38909 CTATCATACTCTCCCCAAAGATGGAGTTCGGTAGGCACTTTTC--AAGAAGCAGCCCCGG 38966 Query 9110 -TAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTT 9168 |||| || | || |||| ||| ||||| || | |||| ||| | || |||||||| Sbjct 38967 ATAGAACTCCAAGGCATCGATGTCTCCATATAGCTCCTCCAGCTCCACTGCCATCTCCTT 39026 Query 9169 CTCACCTACAAG 9180 ||| |||||||| Sbjct 39027 CTCTCCTACAAG 39038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720677585992600