Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq303605 116 5e-21 >seq303605 Length=1184199 Score = 116 bits (128), Expect = 5e-21 Identities = 180/251 (72%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 197398 CCGCTAAATATCTCAAACGCGACAGATATTGAGAACGTGGCTTGGAACGG-CCCTAAAAT 197456 || ||||| |||||| | |||| |||||| ||||| | ||||| || ||| ||||| Sbjct 50135 CCCCTAAACATCTCAGTAGATGCAGAGATTGAGCACGTGACCTGGAATGGTCCCCAAAAT 50076 Query 197457 CGCTTTAGCATTTGCCAATCCTAA---AGACGTTACCATAATGGATAAAAGCTACCAGGG 197513 ||| | || || || |||| || ||| || ||||| |||| |||||||||||||| Sbjct 50075 -GCTCTTGCTTTAGCATATCCCAACAGAGAGGTAACCATTATGGTCAAAAGCTACCAGGG 50017 Query 197514 TCGTGTCAACATTAGCCAAACCAA-CTACTCTTTGTGCATTAGGAACCTGACCGTGAATG 197572 ||| | ||||| | ||| ||| ||||| | ||| || ||| ||||| |||| | Sbjct 50016 TCGACTAAACATCA-CCAGCTCAAGTTACTCCCTCAACATCAGCAACTTGACCATGAAAG 49958 Query 197573 ATGCTGGTTCGTATAAGGCCCAAATTAACAAAAATAATTCCCAAGTCACCACCAAGGAGG 197632 |||| || || || || || || || ||| |||| |||| ||| |||||| |||| Sbjct 49957 ATGCAGGATCCTACAAAGCTCAGATCAACCAAAAGGATTCTAAAGACACCACTGAGGAAA 49898 Query 197633 AATTTACTCTG 197643 |||| || ||| Sbjct 49897 AATTCACCCTG 49887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699229170758960