Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq303605 170 2e-37 seq236152 107 2e-18 seq142862 86.0 8e-12 seq315339 82.4 1e-10 >seq303605 Length=1184199 Score = 170 bits (188), Expect = 2e-37 Identities = 197/264 (75%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 2205 AAACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAG 2264 ||||||| ||||| || || | | ||||||||||| | | | |||| ||| ||| ||| Sbjct 362333 AAACTGAGCAACATACAAGTTACCCATCACAGTCAATTATTTGAGAACAGGACCTGTGAG 362392 Query 2265 ATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCC 2324 || || ||| |||| ||||| ||| |||| |||||| | |||| |||| ||| || | Sbjct 362393 ATTCACCTGGCCTGCTCTGTGGAGAATCCGAATGACGATGTCTCATTCAGGTGGCAGACT 362452 Query 2325 TTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGC 2384 | || || || |||||| | || || |||||||| | |||||| |||| |||||| | Sbjct 362453 TCAGGAAATACACTTCTAAGTGAACCAAACCTCACTATCTCCTGTGACCTCAGGAATTCC 362512 Query 2385 AGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTC 2444 | ||| ||||| |||| ||||| || || ||| | || |||||||| || ||| | ||| Sbjct 362513 AATGAACAGAAGTACATATGCATAGCGGAGAACCCCGTCAGCAATCTATCCTTCTCTGTC 362572 Query 2445 TCGGCCCAGAAGCTGTGT-GAGGT 2467 || || |||| ||| ||| ||||| Sbjct 362573 TCAGCTCAGAGGCTCTGTGGAGGT 362596 >seq236152 Length=34290 Score = 107 bits (118), Expect = 2e-18 Identities = 209/303 (69%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 112801 AGATGGA-GATACTTACATTTGTGTTGTAGCAGCTGGCGAAAAGAGCCGTGCTCTTGGCT 112859 |||| || || ||||| | |||||||||||| || || || | | | ||||||||| Sbjct 29317 AGATAGATGAGACTTATGTGTGTGTTGTAGCAACTTGCAAACATTGTCATGCTCTTGGAC 29258 Query 112860 GTCTGATGATCGATGCTGATGACATTATCTTTAT-TCTCCACTGCGTATTCTGTAGCGAA 112918 | ||| || ||| ||||||||||||| | | || | | | || ||| | ||| Sbjct 29257 GCAACATGGTCCATGGATATGACATTATCTTGACATGTCAAAT---TTTTTTGTGG-GAA 29202 Query 112919 CGTGTAGCGGCATCGGAATTCGACTTCTTTGAGCACGAATTGAGAAACATGCTTCTGATG 112978 | | | |||| || || |||||||| | || | ||||||||||| |||||||| Sbjct 29201 CATTCGTCTGCATTTAAAGTCAACTTCTTTT-GAACATAGTGAGAAACATGTTTCTGATG 29143 Query 112979 GGCTACGTAACCGATACTAATTCCTATAATATGTTTGAGGAGAAAGGAGATCACTGGAAT 113038 ||||| || || || | || || |||| ||| | | |||| | || | ||||| Sbjct 29142 TGCTACATATCCTATGTTTATACCGTGTATATTTTTCAATAAAAAGCAAATGATTGGAAC 29083 Query 113039 GATGAACCATGTTTTACCATGTCTTCGTGGGACTAAGAACACTGTCGCTTTTTGTTTAAA 113098 || ||||| ||||| || ||||||| || ||||| || || | ||||| || || || Sbjct 29082 AATAAACCAGGTTTTTCCGTGTCTTCTAGGTACTAAAAAAACACTTGCTTTCTGCTTTAA 29023 Query 113099 AAT 113101 ||| Sbjct 29022 AAT 29020 >seq142862 Length=23601 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | || |||||||| ||||||||||||||| || || | ||| Sbjct 15081 CCCTCATGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCAGAAGGTACCACCACAGCG 15140 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || | || | || || | |||| | || ||| Sbjct 15141 GCCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTCTCCACAAGCTCCATGTCCTGA 15200 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| ||||| || || || | ||| || | | | || || || || || || |||| Sbjct 15201 GTTTGGTCTTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAATCCCAGG 15260 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 15261 GCCCAGCACC 15270 >seq315339 Length=212120 Score = 82.4 bits (90), Expect = 1e-10 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 14200 TGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTCCCAT 14259 ||||||| ||| ||||||||||| || || | |||| |||| || || || || |||| Sbjct 192744 TGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTTCCAT 192685 Query 14260 CTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCTCGAT 14319 | || | || | || || | |||| | || ||| |||| || || || ||||| Sbjct 192684 CCCCTGAAGGCCTGGTCTCCACAAGCTCCATGTCCTGAGTTTGGTCCTCCCCATCTCGCC 192625 Query 14320 ACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 ||| || | | | || || || |||||||| |||| |||||||||| Sbjct 192624 GCCAGGTCAGTGTGATCTCCGCAGGATAAAAGCCCAGGGCCCAGCACC 192577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626630857838440