Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq301619 246 4e-60 seq289273 188 8e-43 seq117952 150 2e-31 seq301777 136 5e-27 seq303989 111 2e-19 seq96983 102 1e-16 >seq301619 Length=432943 Score = 246 bits (272), Expect = 4e-60 Identities = 518/764 (68%), Gaps = 10/764 (1%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||| ||| | |||||||| || |||| |||| || || || || ||| |||||| Sbjct 188387 CATCACTCATATTCTCTGATATTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCATTCCTT 188445 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 | ||||| |||| ||||| || ||||||||||| | || | | | ||| | Sbjct 188446 CCAGTGAAGTATTATCCATCAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAAC 188505 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | |||| || ||| || || || ||||| || ||||||| ||||| | | Sbjct 188506 CCAGTTCCAGCATAAGTCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAAT 188565 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109 | || ||||| || || || || | || ||| ||| ||| | | || |||| | || Sbjct 188566 TCATCCCAATGAGCTTCACAGGCAAGGCTTCTGTGAGGAACTCCTGTT-CTATCCTAACT 188624 Query 37110 GCATCTTTAACTATATTAACAATAACT-TCT--TCAGTTGGGGGATATTTTAAATATTTA 37166 |||| | | ||| | | | ||| ||| || | ||| | | | | | ||| Sbjct 188625 GCATTGATGATTATTT---CTTTTACTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTG 188681 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | | || ||||| ||||| ||||| || |||||||| || || | |||||| | | Sbjct 188682 AATATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGA 188741 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || | || ||||| | |||| ||| || | ||| ||||| | || |||||| ||| Sbjct 188742 AATGTGAGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCA 188801 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 |||||| | || ||||| ||||| ||||| ||||||| |||| || |||| | Sbjct 188802 GAAAAGCAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCT 188861 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | || | |||| | |||||||||||| || ||||| || || ||| Sbjct 188862 TTGTCCCCAGTCCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCA 188921 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || || |||||||| | |||||| ||| | || ||||| ||||| || | | Sbjct 188922 ATGGCATTGAAGAGAAATTCCCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGA 188981 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 || ||||||||||| || || ||||| || || || || || ||||| ||||| | ||| Sbjct 188982 CTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCT 189041 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 || | | |||||| || | ||| | || | ||||||||||| ||||| ||||| Sbjct 189042 TCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCT 189101 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 || ||||||||||||| |||||| |||||||| ||| || Sbjct 189102 CTTGCTGCAAAGAAAGTCAGAACACGCGATATAAAATATCTCTC 189145 >seq289273 Length=322959 Score = 188 bits (208), Expect = 8e-43 Identities = 297/420 (71%), Gaps = 4/420 (1%) Strand=Plus/Plus Query 37217 TTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGC 37276 |||||| ||||| || || | | ||| | ||| ||| || | || ||||| | ||| Sbjct 72678 TTCATTGGAAAATGTAAAGCTTCACATCAGTCCTTGTTTCTTGAGGCAGAATATCGATGC 72737 Query 37277 AAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAA 37336 |||||| ||| ||||||| || ||||| ||||| ||||| ||||||| || | || || Sbjct 72738 AAAAGAACCAAAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACATTCTCCAAA 72797 Query 37337 AGTTGAA-CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATT 37395 ||| | || | || || |||| | | ||||||||||||| || ||||| Sbjct 72798 AGTAGCCTCTTTGTTCCCAA-TCCAACCTAAGGCCCAATCTGCCTTTTTCTTGACACAAG 72856 Query 37396 CAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTAT 37455 | || | ||| | || |||||||| || |||||| | ||| | || ||| | | Sbjct 72857 GCAACGTCTTAATGGTGTTGAAGAGAAATTTCCTTTCTTTGCAGTCTTTAATGTAAATGT 72916 Query 37456 CAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAA 37515 |||| || | ||| || |||||||| | || | ||| || || || || || ||||| | Sbjct 72917 CAATAAGGAGACTGTATATTTCAGAATATATGTGTTCCATGGCAATTTGGAATCCATAGA 72976 Query 37516 AACACCTAGCTTCAGATAA-TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTA 37574 || | | ||||| |||| |||||| || | ||| | || | ||| ||||||| Sbjct 72977 AATAGCAGGCTTC-TATAATTTGAACTTCTTGGCTAAATCACTCTACCAAGCTTTCATTT 73035 Query 37575 ACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||| |||||||| |||||||||||||| ||||||| | |||||||| |||||| ||| Sbjct 73036 ACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGTGATATAAAATATCTTTCCTCA 73095 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | ||||||| || |||| |||| || || || || |||||||||| Sbjct 72098 CATCACTCCCATTCTCTGATATTAGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 72156 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 72157 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 72190 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | ||||||| || |||| |||| || || || || |||||||||| Sbjct 72563 CATCACTCCCATTCTCTGATATTAGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 72505 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 72504 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 72471 >seq117952 Length=1479372 Score = 150 bits (166), Expect = 2e-31 Identities = 195/266 (73%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 |||||||||||| ||| ||||| | || || ||||| || || |||||||| || | Sbjct 1360514 CCAATCTGCCTTCTTTTTGACACAAGCCATCGTCTCAATGGCATTGAAGAGAAATTTCCT 1360573 Query 37430 ttCTTCACTATCTGTTATAT-AAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488 ||||| | ||| | || | |||| ||||| || | |||| |||| |||| || || | Sbjct 1360574 TTCTTTGCAGTCTTTAATGTTAAGTGTCAATAAGGAGACTA--CATTCCAGAATGTATGT 1360631 Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAA 37548 |||| | ||| || || || ||||| ||| | | |||||| | | |||||| || | | Sbjct 1360632 TTTCCACAGCAATTTGGAAGCCATAGAAATAGCGAGCTTCTGTAACTTGAACTTCTTGAC 1360691 Query 37549 AAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608 ||| | || | ||||||||||| ||||| ||||| || |||||||||||||| | || Sbjct 1360692 TAAATCACTCCAC-AAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCACAA 1360750 Query 37609 CATATTTTATAAAATGTCTTTCATCA 37634 ||| |||||||| ||| || ||| Sbjct 1360751 CATGCGATATAAAATCTCTCTCCTCA 1360776 Score = 149 bits (164), Expect = 7e-31 Identities = 349/516 (68%), Gaps = 12/516 (2%) Strand=Plus/Plus Query 36818 CTTCATTT--TTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATT--ACTATTCA 36873 ||||| || |||| || || |||| || ||||| | ||| || || ||| || Sbjct 1359774 CTTCAGTTCATTTAGAAGTCAGCATCCAAAGTAAAAG--AATTCTTTGTTGGACTTGACA 1359831 Query 36874 TAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCT 36932 | ||||||||| | ||||||| || |||| |||| || || || ||||||| |||||| Sbjct 1359832 TCACTCCCATTCTCTGATATTTGCCTACTC-TCTTCTCAAAGAAGTTTGTCTCTCCTTCC 1359890 Query 36933 AGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGAT 36992 ||||| ||||| ||||| || ||||||||||| | || | | | ||| | Sbjct 1359891 AGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAACCC 1359950 Query 36993 AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTT 37052 | |||| || ||| ||||| || ||||| || ||||||| ||||| | || Sbjct 1359951 AGTTCCAGCATAAGTCTATCGGCCACAAACTCGATGTATTGCTTCATTAAGATGCAATTC 1360010 Query 37053 ATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGC 37111 || ||||| || || || || | || || || ||| | | || |||| | ||||| Sbjct 1360011 ATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGGGGAACTCCTGTT-CTATCCTGACAGC 1360069 Query 37112 ATCTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 || | | ||| | | | | | || || | | | | | | | | ||| |||| Sbjct 1360070 ATTGATGATTATTTCTTTTACTCTTTGCTCCAATGGTTTG-TGTGTCAGGTGTTTGAACA 1360128 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 | || ||||| ||||| |||||||| ||| |||| | || | |||| | ||||| | Sbjct 1360129 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCAACTCTGTTAATAAGTTCACTGGAAAATG 1360188 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 | | || ||||| | ||| ||| || | ||| ||||| | ||||||||| ||||||| Sbjct 1360189 TGAGACCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAA 1360248 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGAC 37326 |||| || ||||| | ||| ||||| ||||||| || Sbjct 1360249 AGAAGATGCCTTCCATTGCAGCAAAGGCTACAACAC 1360284 >seq301777 Length=185553 Score = 136 bits (150), Expect = 5e-27 Identities = 288/427 (67%), Gaps = 7/427 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATT----CATTAGAAAAGGT 37231 || ||||| ||||| ||||||| |||||||| || || | || || | ||| | || Sbjct 170051 CAGGCAAAGTCACAGTGTAAACTCTCATCTCTGCTAATAAGTTAGTTCACTGGAACATGT 169992 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA 37291 | || ||||| | ||| ||| || | ||| ||||| | ||||||| |||||||| Sbjct 169991 GAGGCCAGGCATCATTCCTTGTTTCTTGAGCCAGAATATCAATACAAAAGAACCAGAAAA 169932 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACG-TGTACCGAAAGTTGAACTATAAT 37350 ||| || ||| | ||||| ||||| ||||||| | | | | | |||| | | | Sbjct 169931 GAAGATGCCTCCCACTGCAGCAAAGGCTACAACATGCTCTCCATTAAGTAGCCTCCTTGT 169872 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | |||||| | | |||| |||||| ||| ||||| || || ||||| | Sbjct 169871 CCTGAATCCAATGCAAGGCCCAACTTGCCTTCTTTTTGACACAGGGCATCGTCTCAATGG 169812 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | || | || ||| || |||| ||| | || ||||| ||||| || | ||| Sbjct 169811 CGTTGATGATAAA--TTCCCTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTGC 169754 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||||||||| || || ||||| || || || || || ||||| ||||| ||||| | Sbjct 169753 ACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTG 169694 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | |||||| || | ||| | || | ||||||||||| ||||| |||||| | | Sbjct 169693 TAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTTG 169634 Query 37591 CTGCAAA 37597 | |||| Sbjct 169633 CAACAAA 169627 >seq303989 Length=535067 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 320198 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 320139 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 320138 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 320079 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 320078 ACAACACGT 320070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | |||||||| || |||| |||| || || || || |||||||||| Sbjct 322094 CATCACTCCCATTCTCTGATATTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 322036 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 322035 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 322002 >seq96983 Length=126056 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | || ||||| | |||||| || | Sbjct 32465 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 32406 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 32405 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 32346 Query 37318 CTAC 37321 | || Sbjct 32345 CCAC 32342 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 36824 TTTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCCC 36881 ||||||||||||| |||| || ||||| |||| | | || || | ||||||| | Sbjct 43123 TTTTTAAAAATCTGCATCCAAGGTAAAGACATTATCTG-TGGTTTCTGT-CATAACTGCA 43066 Query 36882 ATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATA 36941 | ||||| ||| ||||||| | || || |||||||| |||||||||| || || Sbjct 43065 AAACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATG 43006 Query 36942 TTTTCCATAAAATCAAATGGATT 36964 ||||||||||||||||| ||||| Sbjct 43005 TTTTCCATAAAATCAAAGGGATT 42983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589820266131560