Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq314877 134 1e-26 seq123294 96.9 3e-15 >seq314877 Length=772221 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | |||||||||||||| || ||| Sbjct 564768 AGGCCTGTGATGTGTGCGATCATGTATGTGAGCAGGGCATAGCTGGCGATGTTGAAAGGT 564827 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 564828 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 564887 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 564888 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 564931 Score = 102 bits (112), Expect = 7e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || |||| ||||| || ||||||||||| ||||| || || || || |||| | Sbjct 568616 TCATATCTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAGACAGGGCCCAAAT 568675 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||| ||||| ||| ||| || |||||||||||||| ||| || ||||| | Sbjct 568676 CTCCTTCTTCTCTGGTGGAGAATCCTAGGCAGTCCAAAAAGTCTCGGGATCCATTGGCAT 568735 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||| || || ||||| || || ||||| | |||||||| || Sbjct 568736 CCCAGATTTTCACTCCCTTAGAAGACAGTTCTTTAGCATTTGTGGATCC 568784 >seq123294 Length=241001 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| ||| ||||| |||||| || || Sbjct 182058 TTCAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGGA 181999 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||||||||| |||||||| ||||||| ||||| || ||| Sbjct 181998 ATGGAGAACCAAGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 181951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406938389675897