Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq308646 80.6 7e-11 >seq308646 Length=105333 Score = 80.6 bits (88), Expect = 7e-11 Identities = 180/268 (67%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| |||||||| ||| ||||||| | || || || || || || | | Sbjct 84345 TTCCTTCTGGGTGTTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTTA 84404 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 84405 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 84464 Query 1078 TTAATTTTAGC-GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATT 1136 |||||||| || | ||| |||| | | || | |||| |||| ||| | ||| Sbjct 84465 TTAATTTTGGCAAAGAAGAGTTT--GAAGTCAAAAAAGTGACCAAATTGTGCAGCTCATT 84522 Query 1137 TGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGG 1196 |||||| | | ||| |||| || || ||| | ||||| || | ||||| Sbjct 84523 TGTGAACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGTTTTAGATGACACTAAAAGG 84582 Query 1197 GGTTCTGCAGGATTTGGGTCTACCGGAA 1224 || | | ||| ||||| || || |||| Sbjct 84583 GGCCCAGGAGGTTTTGGTTCCACTGGAA 84610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138126302318484