Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq316040 114 1e-20 seq305757 107 2e-18 seq100879 107 2e-18 seq302728 105 5e-18 seq315491 104 2e-17 seq169768 87.8 1e-12 >seq316040 Length=1005281 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | ||| | | |||| |||| || Sbjct 910456 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGAGTGCGGCCATCCTCCAGCTGT 910397 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||||||||| |||||| || || || |||||||| || || ||||| ||||| Sbjct 910396 TTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATTTTA 910337 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | ||||||||||| |||| || ||||| || Sbjct 910336 GCTTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCAAGGGTGATTGTCTTGCCCGTG 910277 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || | || |||||||| Sbjct 910276 AGGGTCTTCATGAAGATCTGCAT 910254 >seq305757 Length=1147529 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || ||||| || ||||| || || |||||||| | Sbjct 1142472 CCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 1142413 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| || || || || Sbjct 1142412 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGAGGG 1142353 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| || || || || || |||| | || ||| | || ||| Sbjct 1142352 ATGCCTTCTTTATCCTGGATCTTAGCCTTCACGTTTTCAATGGTATCACTAGGCTCAACT 1142293 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | || || ||||| |||||||| Sbjct 1142292 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || ||||| || ||||| || || |||||||| | Sbjct 1142244 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAA 1142185 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| || || || || Sbjct 1142184 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1142125 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| || || || || ||| | || | || ||| | || || Sbjct 1142124 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACC 1142065 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | ||||| || || |||||||| Sbjct 1142064 TCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 1142018 >seq100879 Length=438 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || ||||| || ||||| || || |||||||| | Sbjct 208 CCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 267 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| || || || || Sbjct 268 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 327 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| || || || || ||| | || | || ||| | || ||| Sbjct 328 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACT 387 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | || || ||||| |||||||| Sbjct 388 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 434 >seq302728 Length=1132070 Score = 105 bits (116), Expect = 5e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | ||| | |||| |||| || Sbjct 600849 TGCAGGGTGGACTCTTTGTGGATGTTGTATTCTGAAAGAGTGCGACCATCCTCCAGCTGT 600908 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || ||||||||||||| |||||| || || || || ||||| || || ||||| ||||| Sbjct 600909 TTGCCTGCAAATATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTA 600968 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | || |||||||| |||| || ||||| || Sbjct 600969 GCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTTCAAGGGTGATTGTCTTGCCTGTG 601028 Query 101447 AAAGTTTTTACAAATATCTGC 101467 | || || || || |||||| Sbjct 601029 AGGGTCTTCACGAAGATCTGC 601049 >seq315491 Length=2321803 Score = 104 bits (114), Expect = 2e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 101268 GAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCT 101327 |||| ||||| || ||||| || ||||| || | ||| | |||| |||| ||||| Sbjct 1833731 GAAGAGTAGACTCCTTTTGAATGTTGTAGTCATATAGAGTACGTCCATCTTCCAGTTGCT 1833672 Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 | || ||||| || | | || ||||| | ||||| |||| ||||| || || || Sbjct 1833671 TGCCAGCAAAGATTAGTCTTTGCTGATCAAGAGGAATTTCTTCCTTATCCTGGATCTTGG 1833612 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 |||||| |||||| || || || | ||| || ||||||||||| || || | || | Sbjct 1833611 TCTTTACATTTTCTATTGTATCTGAGGATTCAACCTCAAGAGTGACTGTCTTCTCTGTAA 1833552 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| |||||||| Sbjct 1833551 GAGTATTCACAAAAATCTGCAT 1833530 >seq169768 Length=302843 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 108925 TGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGC 108984 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||| | || | | ||| || ||| | || |||||||||||||| || || || Sbjct 108985 TTGCCTGCAGAAATGAGCCTCTGCTGGTCGAGAGGGATGCCTTCTTTATCATGGATCTTG 109044 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||| | || || | || |||| || |||| ||| Sbjct 109045 GCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTGTAGGGTGATGGTCTTGCTGGTC 109104 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 109105 AGGGTTTTCACGAAGATCTGCAT 109127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394649897506473