Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq130668 89.7 4e-13 seq316040 86.0 5e-12 seq302728 86.0 5e-12 >seq130668 Length=27386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| ||||| || || ||| |||||| || || ||||| ||||| Sbjct 9816 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9757 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| ||| || |||||||| ||||| | ||| || || | || Sbjct 9756 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9697 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCA---CAGACTCTGACGCCTCC 48716 | |||||||||||| |||||| || || | | || | | ||| | ||| Sbjct 9696 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGAC-GTTCTCAATGGTGTCGCTG--GGCTCG 9640 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||||| || || || || || |||| || || || || ||||||||| Sbjct 9639 ACCTCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATC 9589 >seq316040 Length=1005281 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| |||||| || || ||||| || || ||| | || Sbjct 910471 AGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGAGTGCGG 910412 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || || ||||||||||| ||||| || || | |||| ||||||| Sbjct 910411 CCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGAATGCCCTCC 910352 Query 48669 TTGTC 48673 ||||| Sbjct 910351 TTGTC 910347 >seq302728 Length=1132070 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || | || ||||| || || ||| |||||| || || ||||| || || Sbjct 600824 GCCACCTCTCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTATTCTGA 600883 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| | || |||| ||| || || ||||||||||| ||||| || || | || Sbjct 600884 AAGAGTGCGACCATCCTCCAGCTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGTGG 600943 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 600944 GATGCCCTCCTTGTC 600958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379372140385047