Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq143030 196 9e-45 seq301619 170 4e-37 seq314797 93.3 8e-14 seq301777 91.5 3e-13 >seq143030 Length=26614 Score = 196 bits (216), Expect = 9e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 10061 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 10120 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||||| ||||| || ||||| || | |||||| |||||| Sbjct 10121 TCCCGGAGGATGCCGGCGGTATTCGACAGCCCGGCGTTCTCCGCCTTGAGTGTCTTCACC 10180 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 10181 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 10240 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 10241 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 10300 Query 241625 GAC 241627 ||| Sbjct 10301 GAC 10303 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | |||||||| ||||| || |||| Sbjct 10098 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGATGCCGGCGGTATTCGACAGCCCGGCGT 10157 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||||| | || |||||||| ||||||||||| |||||||| Sbjct 10158 TCTCCGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 10212 >seq301619 Length=432943 Score = 170 bits (188), Expect = 4e-37 Identities = 555/856 (65%), Gaps = 17/856 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| ||| | || |||| || | || || Sbjct 188402 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCATTCCTTCCAGTGAAGTATTATC 188461 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| ||| || || || | || | ||| | | |||| ||||||||| Sbjct 188462 CATCAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAACCCA---GTTCCAGCAT 188518 Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | || || || |||||||||||| ||| | || ||||| || ||||| Sbjct 188519 AAGTCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAATGAG 188578 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| ||||| || | |||||| ||||||| |||||| || || | | || Sbjct 188579 CTTCACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATTAT 188638 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || || | ||| || ||||||| |||||| ||| | | || |||||| Sbjct 188639 TTCTTTTACTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTGA---ATATCAGGCAGGC 188695 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | ||| ||||| || || | ||| || || | |||| || ||| ||||| Sbjct 188696 AAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGCCAGG 188755 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | | ||||||||||| || | | ||||| ||||| ||| ||||||| Sbjct 188756 CATCAGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATGCC 188815 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGAGATCC 48314 |||||||| || || || | | ||||| ||| ||| | |||| | || | Sbjct 188816 TTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCCCCAGTCCA 188875 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||| ||||| |||||||||||||||| || ||||||||||| ||||| ||||| Sbjct 188876 ACGCAAG-GCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATTGAAGA 188934 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCT 48431 | | | || | ||| || || || | | || || | |||||| | Sbjct 188935 GAAATTCCCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACT---GTACATTT 188991 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 |||| || | || || || || || ||||| || ||||| | ||| || || | Sbjct 188992 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTT 189051 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | |||||| | |||| ||||| || || ||||| ||||| |||||| || |||| Sbjct 189052 GAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAA 189111 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 |||| | || ||| | | |||| | ||| | | || | | |||| | Sbjct 189112 AGAAAGTCAGAACACGCGATATAAAATATCTCTCCACAGGTTTCAGGGATTCCCAGTGCC 189171 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | | ||||||| || || || ||||| | ||||| ||||| || ||||| ||| Sbjct 189172 GGAGGTCTTTGGTAAGATCAACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCTTTCGTGT 189231 Query 48672 ACATGCCCCATATGTC 48687 |||| ||| ||||| Sbjct 189232 ACATCTGCCAGATGTC 189247 >seq314797 Length=1184696 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 568439 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCG 568498 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | ||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 568499 GCGATACGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 568558 Query 241619 ATCGGAGAC 241627 ||||| ||| Sbjct 568559 ATCGGGGAC 568567 >seq301777 Length=185553 Score = 91.5 bits (100), Expect = 3e-13 Identities = 248/372 (67%), Gaps = 12/372 (3%) Strand=Plus/Minus Query 48002 TTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACG 48061 ||||| || |||| ||| |||| |||| ||||| ||||||| |||||| || Sbjct 170177 TTCATCCCAGTGAGCTTCACAGGCAGGGCCTAGGTGAGGAACTCCTGTTCTATCCTAACA 170118 Query 48062 GCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCA 48121 || | | || | || || | || ||| ||||||| |||||| ||| Sbjct 170117 GCATTGATGATTATTTCTTTTACTCTCTGCTGTGACGGTTTGTGTATCAGGTGTTTGA-- 170060 Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTT---- 48177 | | || |||||||||||| | ||| || | || || | ||| || || ||| Sbjct 170059 -ATATCAGGCAGGCAAAGTCACAGTGTAAACTCTCATCTCTGCTAATAAGTTAGTTCACT 170001 Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237 ||| | ||| |||||||| | || | ||||||||||| || | ||||| Sbjct 170000 GGAACATGTGAGGCCAGGCATCATTCCTTGTTTCTTGAGCCAGAATATCAATACAAAAGA 169941 Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCC-GAAAGAAG 48296 ||||| ||||||||||| ||||||| || || || | |||||| ||| || Sbjct 169940 ACCAGAAAAGAAGATGCCTCCCACTGCAGCAAAGGCTACAACATGCTCTCCATTAAGTAG 169881 Query 48297 CGTTCTTGT-CTGAGATCC-AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCAT 48354 | | ||||| |||| |||| | | ||| ||||| ||||||||| |||| || ||||| Sbjct 169880 CCTCCTTGTCCTGA-ATCCAATGCAAG-GCCCAACTTGCCTTCTTTTTGACACAGGGCAT 169823 Query 48355 CGTCTCTATGGC 48366 |||||| ||||| Sbjct 169822 CGTCTCAATGGC 169811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927606517333760