Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq301619 131 3e-25 seq301777 100 5e-16 seq96983 89.7 1e-12 seq117952 86.0 1e-11 seq303989 84.2 4e-11 >seq301619 Length=432943 Score = 131 bits (144), Expect = 3e-25 Identities = 403/607 (66%), Gaps = 31/607 (5%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| ||||||||| ||| ||| | ||| ||||| || |||||| ||||| Sbjct 189247 GACATCTGGCAGATGTACACGAAAGCTGAGGCCTCCTTTTGGACAGCTGAAGAGGTTGAT 189188 Query 25534 CTGGCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGC-ATTTTCTC 25590 || |||| ||| | |||| ||| | | || ||| | | || || || | Sbjct 189187 CTTACCAAAGACCTC--CGGCACTGGGAATCCCTG---AAACCTGTGGAGAGATATTTTA 189133 Query 25591 AAGTACGTGTT--GGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 | |||||| | | ||||||||||| ||||| ||||| || || || || | Sbjct 189132 TATCGCGTGTTCTGACTTTCTTTGCAGCAAGAGATGGCATAGTAAATGAAAACTTGGTGG 189073 Query 25649 AGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || |||| | | ||||| || ||| || ||| |||||||| || ||||| || Sbjct 189072 AGCGATTTAGCCAAGAAGTTCAAGTTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAAT 189015 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTAC 25763 ||||| ||||| | || ||||| |||| || || || || || ||||||| Sbjct 189014 TGCCATGGAAAACATACATTCTGAAATGTA---CAGTCTCCTTATTGACACTTACATTAA 188958 Query 25764 AGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAG 25823 |||| | || || || || || |||||| ||| || || | |||||| Sbjct 188957 AGACCCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTCAAGAA 188898 Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGC 25882 |||||| |||||| || |||| | | || || | |||| | ||| || || Sbjct 188897 GAAGGCAGATTGGGCCTTGCGTTGGA-CTGGGGACAAAGAGGCTACTTATGGAGAACGTG 188839 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCT--TTTTCAGCGGTTCGTTTGCGGCCATCTT 25940 | |||||||||||||| ||||| ||||||| ||||| | |||| ||| | | || || Sbjct 188838 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTGCTTTTCTG--GTTCTTTTACATCGATATT 188781 Query 25941 CTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCA 25999 |||||||||| | | | |||| ||||| || || ||| |||| || || || |||| Sbjct 188780 CTGGCTCAAGAA-ATGAGGACTGATGCCTGGCCTCACATTTCCCAATGAACTTATTAGCA 188722 Query 26000 GGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA 26059 | || ||||| | ||| | || |||||||||||| | | || ||| || | |||| Sbjct 188721 GAGATGAGGGCTTACACTGTGACTTTGCCTGCCTGATATTCA---AACACCTGATACACA 188665 Query 26060 AACCTTC 26066 |||| || Sbjct 188664 AACCATC 188658 >seq301777 Length=185553 Score = 100 bits (110), Expect = 5e-16 Identities = 308/467 (66%), Gaps = 22/467 (5%) Strand=Plus/Plus Query 25620 TGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTG 25677 |||||| ||||| || || || || ||| |||| | | ||||| || ||| Sbjct 169638 TGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACA-- 169695 Query 25678 GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTAT 25737 || ||| | |||||||| || ||||| || ||||| ||||| | || ||||| ||| Sbjct 169696 GAAGCCCACTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTG- 169754 Query 25738 GCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGT 25794 || || || || || ||||||| |||| || | |||| || | | Sbjct 169755 --CAGTCTCCTTATTGACACTTACATTAAAGAC-TC-CAAAGAGGGAATTTATCATCAAC 169810 Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||| ||| || ||| | |||| | |||||| | |||||| || | ||||| | Sbjct 169811 GCCATTGAGACGATGCCCTGTGTCAAAAAGAAGGCAAGTTGGGCCTTGCATTGGATTCAG 169870 Query 25855 AGCCAGAGCGCTACGTT-TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 | || ||||| | ||| |||| | |||||||||||||| |||| |||||||| Sbjct 169871 GACAAGGAGGCTACTTAATGGAGAGCATGTTGTAGCCTTTGCTGCAGTGGGAGGCATCTT 169930 Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCT 25973 || ||||| |||| || |||||||||||| | | || | ||||| || || Sbjct 169931 CTTTTCTGGTTCTTTTGTATTGATATTCTGGCTCAAGAAACAAGGAATGATGCCTGGCCT 169990 Query 25974 GTACTTTTCC----AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCT 26029 | |||| ||| | || || ||||| || ||| || | ||| | || ||||||| Sbjct 169991 CACATGTTCCAGTGAACTAACTTATTAGCAGAGATGAGAGTTTACACTGTGACTTTGCCT 170050 Query 26030 GCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA--AGAGA 26074 ||||| | | || ||| || | |||||||| || || ||||| Sbjct 170051 GCCTGATATTCA---AACACCTGATACACAAACCGTCACAGCAGAGA 170094 >seq96983 Length=126056 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||||||||| || || || ||| || || ||||| || || |||| Sbjct 32340 TGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCT 32399 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || ||||| ||||| |||||||| || ||||||||||| | Sbjct 32400 GGCTAAAGAAGAGAGGTCTTATGCCTGGGCTCACTTTTTCCAATGAACTCATCAGCAGAG 32459 Query 26003 ACGA 26006 | || Sbjct 32460 ATGA 32463 >seq117952 Length=1479372 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| |||| |||||||| || ||||| ||||| | || |||||| Sbjct 1360279 GTAGCCTTTGCTGCAATGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 1360220 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| | | || ||||| || || ||||||| || || || | ||| | Sbjct 1360219 CTCAAGAAACAAGGACTGATGCCTGGTCTCACATTTTCCAGTGAACTTATTAACAGAGTT 1360160 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 |||||| | ||| | || |||||||||||| Sbjct 1360159 GAGGGTTTACACTGTGACTTTGCCTGCCTG 1360130 >seq303989 Length=535067 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| |||||||| || ||||| ||||| | || |||||| Sbjct 320077 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 320136 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || |||||||| || || || ||||| || Sbjct 320137 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 320195 Query 26004 CGAGG 26008 |||| Sbjct 320196 TGAGG 320200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 924929846884160