Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq304600 343 2e-89 seq307670 168 8e-37 seq314866 93.3 5e-14 seq314303 93.3 5e-14 >seq304600 Length=151085 Score = 343 bits (380), Expect = 2e-89 Identities = 770/1143 (67%), Gaps = 19/1143 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || |||| ||| |||| ||| || | |||||||||| |||| || || Sbjct 34757 TGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACGTCTACGTCAAACTTG 34816 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || ||||| | |||||| || | || ||||||| || ||| || | ||||| ||| Sbjct 34817 TTGGCGAATAAATGGTGT---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAAACG 34873 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || ||||| || | ||| || |||| ||| |||||||| | || || || | || || Sbjct 34874 CACACGGAGCGCACGTGGACCCCGTCGCAGGGCGGGTAGGGTGCGCCCTTGGAAACATCC 34933 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| |||||||| || | || |||||||| || |||||| Sbjct 34934 CCCTCAAAGTACTGCCACTTGACAAACCTAGCAACTGCGTGCATGTCAGACAAGTCGTAC 34993 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | | || | | || || || | || || | ||| | ||||||||| || Sbjct 34994 TTATGGCTTAAGGAGAGTGAGCCAGGGACTTCAGGGATCCTCTGGATGGTGGCCCAGAGA 35053 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | || || |||||||| ||||| | | ||| ||||| |||| |||| | | | Sbjct 35054 TACTCATCTGGGCTGTAAGTGTCTTGCGCCCACTCCATAAACTTCTGGATTTTTCCATTC 35113 Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466 ||| || | ||||| || | || |||||||| || ||||| || || | Sbjct 35114 TCCAGCACATACCCCACGTACTCCCTACTGACCACAAAGTAGGCACTGCCTGAAAAAAGA 35173 Query 160467 GGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 || | | || || || | |||| | || ||||| | || | ||| || | Sbjct 35174 GGCGTTTCCAAGGGAGGACGCAT-TTTGACAGTCCCCGTGTTTGTCAGCTTTCCATTAAT 35232 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 || | | | || || |||||||| | || | | |||||| | || ||||| || Sbjct 35233 CACCTCATACCGTTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCGGTCTCGAG 35292 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 |||| | || | ||| || ||| | |||| || |||||||| || |||| || Sbjct 35293 GTTGTTTTCGCCCATTAACGACTTGAGCCTCCTGACCATTTCTAGGTTGGTTTTGATGGG 35352 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--G 160703 ||| || | || || | ||||||| |||| |||| | || |||| ||||| || | Sbjct 35353 AAAATCCATCCCACAAAGATTTATCAAGTACCTCCAGTCTGCACTCA--TCGTGTAGAGG 35410 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 ||| ||||||| || | || ||||| || || ||||| || || || || || ||||| Sbjct 35411 TCCTTCATGCAGTTGAGGTCGGCCTGAACCCGACTCCATGAGGCATAAACCACATTCTCC 35470 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCC---AGA 160820 | | ||||||||| |||||||| ||| || || |||| |||| ||| || | | Sbjct 35471 AACTGACTGGCCACGAAGACGTTGCTGAAGCAGGATGCGATGCCCATCACTGCAGCTAAA 35530 Query 160821 AAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 ||| | ||| | | | ||| ||||||||| | ||| || | ||||| ||| ||| Sbjct 35531 AAGGA-ATCCTCT--GATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGGGGCATATAG 35587 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 |||||||| || | ||| |||| ||| || || || ||||| | ||| ||||| || ||| Sbjct 35588 ATGGCCCTCAGGAGCCTGTCGAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCT 35647 Query 160941 ATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATA 161000 || |||||||| | ||| || ||| |||| || | ||||| ||| ||||| | Sbjct 35648 ATGGGAAACTCCGCCTCTTCTTTACTAAGGGGTTCGAGGATATACTTGCGCCTCTTGCTG 35707 Query 161001 AAATAATCACAATCCCGCGTCATGTTGATATA-CGATCGCGCGTCCAGTCTGGGCCTCCG 161059 ||| || |||||| | |||||||||||||| | ||||||| | || | | Sbjct 35708 AAAGAAGGACAATCACTTGTCATGTTGATATAGTCAGAAGGCGTCCA-CCGAGGGCGCTT 35766 Query 161060 TCTAAAGTCAACCGTGATGCCCCTC-AGTTTAGCCTTCAGTATCTCGTCTGAATCCCCGT 161118 || ||| | ||||| | || ||| || || ||||| | || ||||| | ||| || | Sbjct 35767 TCGAAATTTCACCGTTA-GCATCTCAAGCTTTACCTTCTGGATTTCGTCGGTATCACCCT 35825 Query 161119 GAAGGATCTTAGTACAGTTGACGTCCCTGGCGGGACGGTCTCCTACCAACTCGAGGCTTC 161178 | | | || || || || | ||| ||| ||| ||||| |||| ||| | | || Sbjct 35826 GTAAAACTTTGGTGCAATTAATGTCACTGCTAGGATTCTCTCCCACCAGCTCTAAGTGTC 35885 Query 161179 TGA 161181 ||| Sbjct 35886 TGA 35888 >seq307670 Length=1603115 Score = 168 bits (186), Expect = 8e-37 Identities = 249/351 (71%), Gaps = 4/351 (1%) Strand=Plus/Plus Query 160612 GCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCA 160671 ||| | |||| || |||||||| || |||| ||||| || | || || | ||||||| Sbjct 112721 GCTTCCTGACAATTTCTAGGTTGGTTTTGATAGGAAACTCCATCCCACAAAGATTTATCA 112780 Query 160672 CGTACTTCCATTTCGCGCTCAGGTCGTGCAGG--TCCCTCATGCAATTAATATCTGCCTG 160729 ||||||||| | || ||| ||||| ||| ||||||||||| || | || || || Sbjct 112781 AGTACTTCCAGTCTGCCTTCA--TCGTGTAGGGGTCCCTCATGCAGTTGAGGTCAGCTTG 112838 Query 160730 CACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATC 160789 || | ||||| || || | || || ||| | | ||| ||||||||||| ||| Sbjct 112839 AACTTGACTCCATGATGCAAAAACCACACCCTCCAACTGACTAGCCACAAAGACATTACT 112898 Query 160790 GAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCAC 160849 |||||| || |||| |||| |||||| ||||| | || | |||| |||||| Sbjct 112899 GAAACAGGATGCGATGCCCATCACCGCAGCTAAGAAGGAATCCTCTGACTTTGAGTCCAC 112958 Query 160850 GTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTC 160909 ||| | ||| || | |||||| || |||||||||| | || | ||| || | ||| || Sbjct 112959 GTGAATGCAGTAGACATTCTGATGCATGTAGATGGCCGTCAGGAGCCTGTCAAGCATTTC 113018 Query 160910 TATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 || || ||||||| ||| ||||| || ||||| |||||| | | ||| || Sbjct 113019 AATTTTGTGATGGACCACTATAGATTATGCTATGGGAAACCCCGCCTCTTC 113069 >seq314866 Length=1018640 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 496561 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 496502 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || ||||| | ||| | ||||| | | || Sbjct 496501 GGAATATAATTCTCATAGTTTTCCCTAGACGGTCCCAGAACAACAGGTACAGAGCCAGCC 496442 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | |||| |||||| | ||||| || |||| |||||||||||||| | Sbjct 496441 AGGAAAGCATTATAGAGCTTTTCAGTAATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 496382 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 496381 AGATAAAATTTACA 496368 >seq314303 Length=304259 Score = 93.3 bits (102), Expect = 5e-14 Identities = 196/290 (68%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || | | || || |||||||||| |||||| | Sbjct 96182 GTCAAACTTGTTGGCTAACAGGTGATG---GCTTTGAAGCATCCAGTGCAGGTCTCCAGT 96126 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | ||||| || || ||| | || ||||| | || | || || || Sbjct 96125 CCCATAAATACAGACAGATCGCTGGTGGATTCCAGAGCAAGAGGTATAAGGTGCCCCCTT 96066 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | ||| ||||||| | |||||| || || | |||||| || | |||||| || Sbjct 96065 ACTGATGTCTCCTTCGTGTTCCTGCCATTTGACTAGCCTGGCAATAGAAGTCATGTCTGA 96006 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | |||| || ||| || |||||| | ||||| | | | | ||| ||||| ||| Sbjct 96005 GATGTCATACTTGCGGTGCAAGGGAACAGAGCCGGGCATCCACTGTGCA--CGCTGAAGG 95948 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| || ||||| ||||| || || ||||| || |||||| || Sbjct 95947 GTGGCCCAGAGATGTTCATCGGGACTATAGGTGTCTTTTACCCATTCAAT 95898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574786300439640