Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq305757 113 8e-20 seq100879 104 4e-17 seq130601 100 5e-16 seq308817 98.7 2e-15 seq303727 95.1 2e-14 seq131556 93.3 8e-14 seq309042 91.5 3e-13 seq288039 89.7 9e-13 seq126465 89.7 9e-13 seq301546 86.0 1e-11 seq288811 86.0 1e-11 seq80097 84.2 4e-11 >seq305757 Length=1147529 Score = 113 bits (124), Expect = 8e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 |||| ||| ||||| |||| ||||| ||||| |||| || | |||||| ||| || Sbjct 1142481 AATTAATAG-CCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTT 1142423 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | ||| || | || || || |||||||| | ||||| || Sbjct 1142422 GTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTG 1142363 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||||| || ||||||||||| || || || | || | ||| ||| ||||| Sbjct 1142362 GTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTCACGTTTTCAATGGTATCACT 1142303 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||||||| || || || || || || || || || ||||| || ||||| Sbjct 1142302 AGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || ||||| |||| || | |||||| || || || || Sbjct 1142247 ATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCA 1142188 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || |||||| Sbjct 1142187 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 1142128 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || |||| || | ||| || ||||| | |||| Sbjct 1142127 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCA 1142068 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || || || || ||||| || || || |||||||| Sbjct 1142067 ACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 1142015 >seq100879 Length=438 Score = 104 bits (114), Expect = 4e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 |||| ||| ||||| |||| ||||| ||||| |||| || | |||||| ||| || Sbjct 199 AATTAATAG-CCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTT 257 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | ||| || | || || || ||||| || | ||||| || Sbjct 258 GTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTG 317 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||||| || ||||||||||| || || |||| || | ||| || ||||| Sbjct 318 GTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACT 377 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||||||| || || || || || || || || || ||||| || ||||| Sbjct 378 GGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 434 >seq130601 Length=139167 Score = 100 bits (110), Expect = 5e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||| || |||| || | || | ||| || Sbjct 8493 ACAAGATGAAGAGTAGACTCCTTTTAAATGTTGCAGTCAGACAGAGTACGTCCATCTTCC 8552 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| ||| ||| |||||||||||||| |||||||| ||||| ||| Sbjct 8553 ACCTGCTTGCCAGCAAAGGTTAGTCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGT 8612 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| || | | |||| || | ||||| || ||||| || || | Sbjct 8613 ATCTTGGCCTTTACATATTCTACTGTATTCGAGGGTTCAACCTCAAGAGTGATGGTCCTC 8672 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 || || || ||||| ||||| || ||||| || |||| Sbjct 8673 CCAGTGAGGGTTTTCACAAAAATCTGCATCTTGGTAGT 8710 >seq308817 Length=568824 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 129918 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAATGTACATCCATCTTCC 129977 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||||||| ||| || ||||||||||| |||||||| ||||| || Sbjct 129978 AGTTGCTTGCCAGCAAAAATTGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 130037 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || ||||| |||| |||| || |||| || | ||| | || ||||| | | || Sbjct 130038 ATCTTGGTCTTTACATTTTCTATTGTATATGAGGGTTCATCCTCGAGAGTGAAGGCCTTC 130097 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||| || |||| || || || ||||| || Sbjct 130098 TCTGTAAGTGTTTACACGAAAATCTGCATCTT 130129 >seq303727 Length=1188818 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| || || ||| || ||||| || | || | ||| || Sbjct 949492 ACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 949433 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 949432 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 949373 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 949372 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 949313 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| | || || ||||| || Sbjct 949312 CCCGTAAGGGTTTTCATGAAAATCTGCATCTT 949281 >seq131556 Length=230148 Score = 93.3 bits (102), Expect = 8e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||| || ||| || ||||| || | || | ||| || | ||| || || Sbjct 29407 GTAGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACATCCATCTTCCAGTTGCTTGCCA 29348 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 ||||| || | ||| || ||||||||||| |||||||| |||||||| || ||||| ||| Sbjct 29347 GCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTGGTCTTT 29288 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | |||| | || || | || | ||| || ||||| || || || || || || ||| Sbjct 29287 ACATTTTCTACTGTGTCTGGAGGTTGAACCTCGAGAGTGATGGTCTTCCCGGTAAGGGTT 29228 Query 193344 TTTACAAATATTTGCA 193359 || | || || |||| Sbjct 29227 TTCATGAAAATCTGCA 29212 >seq309042 Length=1952097 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || |||||||| | ||| || ||||||||||| |||||||| || Sbjct 293211 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 293152 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | |||| |||| |||||||| | | ||||| | ||||| || Sbjct 293151 GTCCTGGATCTTTGCCTTTACATTTTTTATAGTATCCAAGGGTTCAACCTTGAGAGTAAT 293092 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 || || | ||| || ||||| | ||||| ||||| || | ||| Sbjct 293091 GGTCTT-CTTGTAAGGGTTTTCATGAATATCTGCATCTTGTCAGT 293048 >seq288039 Length=303715 Score = 89.7 bits (98), Expect = 9e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||| ||| || || ||||| |||| ||| || ||||||||||| |||||| | || Sbjct 200325 ATCTTCTTGTTGCTTGCCAGCAAAGATTAGTCTTTGCTGATCAGGAGGAATTCCTGCCTT 200384 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| || |||| || | ||| | || ||||| || Sbjct 200385 ATCCTGGATCTTGGCCTTTACATTTTGTATTATATCAGAGGGTTCATCCTCGAGAGTGAT 200444 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || || | || ||||| ||||| || ||| Sbjct 200445 GGTCTTCCCCATAAGGGTTTTCACAAAAATCTGC 200478 >seq126465 Length=199800 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| || || ||| || ||||| || | || | ||| || Sbjct 39080 ACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 39021 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 39020 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 38961 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| | || || || || || Sbjct 38960 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGGGTGATGGTCTTC 38901 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| | || || ||||| || Sbjct 38900 CCCGTAAGGGTTTTCATGAAAATCTGCATCTT 38869 >seq301546 Length=201193 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||| || ||| || ||||| || |||| | ||| || | ||| || || Sbjct 71809 GTAGACTCCTTTTGAATGTTGTAGTCAGAGTACGTCC----ATCTTCCAGTTGCTTGCCA 71754 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 ||||| | | ||| || ||||||||||| |||||||| ||||| || || |||| ||| Sbjct 71753 GCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 71694 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | |||| | ||||| || | ||||| | ||||| || || || || | || ||| Sbjct 71693 ACATTTTCTGTTGTATCCGAGGGTTCAACCTTGAGAGTGATGGTCTTCCCCATAAGGGTT 71634 Query 193344 TTTACAAATATTTGCATTTT 193363 || | || || ||||| || Sbjct 71633 TTCATGAAAATCTGCATCTT 71614 >seq288811 Length=106209 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| ||| | | || ||||||||||| |||||||| || Sbjct 41966 ATCTTCCAGTTGCTTGCCAGCAAAGATTTGTTTTTGCTGATCAGGAGGAATTCCTTC-TT 42024 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| || | || ||||| || | ||||| || |||| | Sbjct 42025 ATCCTGGATCTTGGCCTTTACATGTTCTATTGTATCCGAGGGTTCAACCTCAGGAGTGAC 42084 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || ||||| || ||||| | || || ||||| || Sbjct 42085 AGTCTTCCCTGTAAGGGTTTTCATGAAAATCTGCATCTT 42123 >seq80097 Length=14650 Score = 84.2 bits (92), Expect = 4e-11 Identities = 110/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 ||| || || |||| || |||| || ||||||||||| |||||||| ||||| || || Sbjct 12766 TTGCTTGCCAACAAAGATACATCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 12825 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333 |||| |||| | | || | ||| | |||||||| || ||||| || || || | Sbjct 12826 CTTGGCCTTTACTTGTTCTATTGGATC-AAGGACTCAACCTCGAGAGTGATGGTCTT--C 12882 Query 193334 TGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || ||||| ||||| || ||||| || Sbjct 12883 TGTAAGGGTTTTCACAAAAATCTGCATATT 12912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895862480406480