Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq301619 120 4e-22 seq305757 105 1e-17 >seq301619 Length=432943 Score = 120 bits (132), Expect = 4e-22 Identities = 458/707 (65%), Gaps = 21/707 (3%) Strand=Plus/Plus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGA--TATTAAATTCA 17927 ||||| || ||| | ||||| ||||| || ||| ||||||||| ||| ||||| | || Sbjct 188406 TATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCATTCCTTCCAGTGAAGTATTA--TCCA 188463 Query 17928 TAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAA-T 17986 | || ||||||||||| ||| || | || || | | | | |||| | Sbjct 188464 TCAAGTCAAATGGATTTTCTACTTTGAAA-ACCTTGCTAAAACCCAGTTCCAGCATAAGT 188522 Query 17987 CTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTG 18046 || || || ||||| |||| ||||| ||| ||| ||||||||| || | || | Sbjct 188523 CTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAATGAGCTTC 188582 Query 18047 AAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTT 18106 | ||| | || || | | || || | |||||| ||| | | | ||||| | | Sbjct 188583 ACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATTATTTCT 188642 Query 18107 ATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAA 18166 |||| || | | ||| | || | ||| || ||||| | || ||||| Sbjct 188643 TTTACTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTG-AATATCAGG--CAGGCAAAG 188699 Query 18167 TCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATT 18226 ||| |||||| || ||||||||| || | ||| || ||| || | || ||||| Sbjct 188700 TCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGCCAGGCATC 188759 Query 18227 ATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCA 18286 | |||| ||| || ||||| |||||||||| ||| || ||||||| | || || || Sbjct 188760 AGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATGCCTTCC 188819 Query 18287 AC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTG--CTCAGTATCCAT 18343 || ||| || || |||| | | ||| || || | | ||| | |||| ||| Sbjct 188820 ACTGCA-GCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCCCCAGT--CCAA 188876 Query 18344 TTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAA 18403 ||||| ||| | | | ||| || || |||| || ||||| || | | Sbjct 188877 CGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATTGAAGAGA 188936 Query 18404 TCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAA 18463 || ||||||||| ||||| || |||||||| || | | | |||||||||||| Sbjct 188937 AATTCCCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAA 188996 Query 18464 TGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA-- 18521 |||||| ||||||| || || || || | ||| || | | || || | | ||||| Sbjct 188997 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACT 189056 Query 18522 TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567 || | ||| ||||| || ||||| || ||||| ||||| || || Sbjct 189057 TCTTGGCT---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 189100 >seq305757 Length=1147529 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||| || || || || || ||||||| || | | Sbjct 1142246 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCTAGT 1142305 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||||||| ||| || || |||||||||||||| ||||| || || Sbjct 1142306 GATACCATTGAAAACGTGAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 1142365 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || |||||||| |||||| | | ||| | || ||||| || Sbjct 1142366 CAGAGGCTCATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1142425 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| |||| || || Sbjct 1142426 ATTCAGAAAGAGTCGACCCTGCA 1142448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728787260152400