Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq309042 114 2e-20 seq308817 111 3e-19 seq305757 91.5 3e-13 >seq309042 Length=1952097 Score = 114 bits (126), Expect = 2e-20 Identities = 152/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 171867 TGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATA-AAGATCGTTCGTCATCCAATTG 171925 || ||||||| ||| || ||| || || || || | || || || | || |||| ||| Sbjct 293258 TGAAAAGTAGGCTCCTTTTGAATGTTGTAGTCAGACAGAATAT-GTCCATCTTCCAGTTG 293200 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 || ||||||||||| | ||| || || ||||| || |||||||| || || || || || Sbjct 293199 CTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTT 293140 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 |||||||| |||||||||| | | ||| || | ||||||||||| || | || Sbjct 293139 TGCCTTTACATTTTTTATAGTATCCAAGGGTTCAACCTTGAGAGTAATGGTCTT-CTTGT 293081 Query 172046 TAATGTTTTAATGAATATCTGCATTTT 172072 | ||||| |||||||||||||| || Sbjct 293080 AAGGGTTTTCATGAATATCTGCATCTT 293054 >seq308817 Length=568824 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | ||||| ||| || ||| || || || || Sbjct 129899 ACCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 129958 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | | | | || |||| ||| || |||||||||||| ||| || || ||||| || Sbjct 129959 CAATGTACATCCATCTTCCAGTTGCTTGCCAGCAAAAATTGGTCTTTGCTGATCAGGAGG 130018 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || | |||||||| ||| |||| ||| | ||| | Sbjct 130019 AATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATATGAGGGTTCATC 130078 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | || || | || | ||||| | ||| |||||||| || Sbjct 130079 CTCGAGAGTGAAGGCCTTCTCTGTAAGTGTTTACACGAAAATCTGCATCTT 130129 >seq305757 Length=1147529 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || | || | || | |||||| || || ||||| Sbjct 1142247 ATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCA 1142188 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||| || || || ||||| || | ||||| |||||||| Sbjct 1142187 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 1142128 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || || || || ||||| || ||||| | || Sbjct 1142127 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCA 1142068 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 1142067 ACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 1142015 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 171838 TAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| ||||| || || || | || | || | || | |||||| ||| || ||| Sbjct 1142478 TAATAGCCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAA 1142419 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | || || | || |||| || || || |||||||| | ||||| |||||| Sbjct 1142418 TCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCA 1142359 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || ||||||||||| || || ||| || || || || ||||| | Sbjct 1142358 GGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTCACGTTTTCAATGGTATCACTAGGC 1142299 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || ||||| || || || | || || | || |||||||| Sbjct 1142298 TCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901320976216200