Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq305689 86.0 2e-11 seq301619 86.0 2e-11 seq117952 86.0 2e-11 >seq305689 Length=659421 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || || || |||||||| || || || || ||||||| ||||| ||||| Sbjct 101303 ACCAGTTTCAGCAGTCTTGACAGCTGTGTCGATAAGCCCCTCACGACCCCCCATGGCATG 101244 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| ||| || || | | ||||| | || || || ||||| Sbjct 101243 GAAGAAGAACTCGGTGGGTGTGAGGCCAGCCAGGTAGGAGTTTTCCACAAAGCCACGGCT 101184 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || ||| ||| | ||||| ||||| |||| || || | || |||| Sbjct 101183 CTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAATCCAAATGG 101124 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 || ||||| || || || |||||||| || Sbjct 101123 AATTCGCTTGCCCTCCACATTCTGCTGCCC 101094 >seq301619 Length=432943 Score = 86.0 bits (94), Expect = 2e-11 Identities = 367/572 (64%), Gaps = 20/572 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || || || | || || ||||||||||| | ||| | | Sbjct 189274 TTTGTCATCTTTCCTATCGAGTACCATGACATCTGGCAGATGTACACGAAAGCTGAGGCC 189215 Query 133136 TTATTTTGGACTTCAACTGAA---GTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCC 133192 | ||||||| || ||||| || ||| | ||||||||| ||||||||| || Sbjct 189214 TCCTTTTGGA---CAGCTGAAGAGGTTGATCTTACCAAAGACCTCCGGCACTGGGAATCC 189158 Query 133193 CTTA---CTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGT 133249 || | ||| | || | | ||||||| || || | | || ||||| || || Sbjct 189157 CTGAAACCTGTG---GAGAGATATTTTATATCGCGTGTTCTGACTTTCTTTGCAGCAAGA 189101 Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAA 133309 ||||| || || |||||| || | || |||| |||||||||| | | ||| Sbjct 189100 GATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACAGAA 189041 Query 133310 GCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCT 133369 ||||| || ||||| | || ||||| |||||||| || |||||| | || | Sbjct 189040 GCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTACAGT 188981 Query 133370 ACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT 133429 || ||||| |||||||| ||||| || | | | | || ||||| |||||| Sbjct 188980 CTCCTTATTGACACTTACATTAAAGACCCCAAAGAAAGGGAATTTCTCTTCAATGCCATT 188921 Query 133430 -AG-CGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACA 133487 || ||| | |||||| | || ||||| | || ||||| | |||| ||||| Sbjct 188920 GAGACGA--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTGGACTGGGGACA 188863 Query 133488 AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttt--tttt 133545 | || | || || ||| | || || ||||||| ||| || ||||| | |||| Sbjct 188862 AAGAGGCTACTTATGGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTGCTTTT 188803 Query 133546 CAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTG 133605 | |||| | || || || || ||||| || || | || | | ||||| || Sbjct 188802 C--TGGTTCTTTTACATCGATATTCTGGCTCAAGAAATGAGGACTGATGCCTGGCCTCAC 188745 Query 133606 TTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 ||| | || ||||||||| || || |||| Sbjct 188744 ATTTCCCAATGAACTTATTAGCAGAGATGAGG 188713 >seq117952 Length=1479372 Score = 86.0 bits (94), Expect = 2e-11 Identities = 221/327 (68%), Gaps = 16/327 (5%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || | || | || ||||||||||||||||| ||| | | Sbjct 1360901 TTTGTCATCTTTCCTATGGAATACCATGACATTTGGCAGATGTATAAGAAAGCTGAGGCC 1360842 Query 133136 TTATTTTGGACTTCAACTGAA---GTAGATTTATCCAAAGACC--CAGCCCACTGGGAAG 133190 | |||||||| ||| || || ||| | ||||| |||| |||| ||||||||| Sbjct 1360841 TCCTTTTGGAC---AACCGAGAAGGTTGATCTTTCCAAGGACCTCCAGC--ACTGGGAAG 1360787 Query 133191 CCCTTACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGT 133249 |||| | || || | | ||||||| || ||| || | || || ||||| || || Sbjct 1360786 CCCTGAAGCCTGAGGAGAGAGATTTTATATCGCATG-TTGTGGCTTTCTTTGCAGCAAGC 1360728 Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAA 133309 ||||| || || |||||| || | | | |||| |||||||||| | | ||| Sbjct 1360727 GATGGCATAGTAAATGAAAACTTGTGGA-GTGATTTAGTCAAGAAGTTCAAGTTACAGAA 1360669 Query 133310 GCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCT 133369 || || || ||||| | || ||||| ||||||| || |||||| | || ||| Sbjct 1360668 GCTCGCTATTTCTATGGCTTCCAAATTGCTGTGGAAAACATACATTCTGGAATGTAGTCT 1360609 Query 133370 ACTCTAATTGATACTT-ACATCAAAGA 133395 || ||||| |||| |||| ||||| Sbjct 1360608 --CCTTATTGACACTTAACATTAAAGA 1360584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1465459003470693