Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq305757 89.7 4e-13 seq100879 84.2 2e-11 >seq305757 Length=1147529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | |||||||| ||||| ||| | ||| |||||| Sbjct 1142246 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCTAGT 1142305 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| || ||||||||| | || || || Sbjct 1142306 GATACCATTGAAAACGTGAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 1142365 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| ||| || || |||||||| |||| | | || | | ||||||||| Sbjct 1142366 CAGAGGCTCATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1142425 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| || || ||||| |||| Sbjct 1142426 ATTCAGAAAGAGTCGACCCTGCACCTGGT 1142454 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || || ||||| | |||||||| ||||| ||| | || ||||| Sbjct 1142015 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCCC 1142074 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || ||||| || ||||||||| | || || Sbjct 1142075 AGTGATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGAC 1142134 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| || || |||||||| |||| | | || | | |||||| Sbjct 1142135 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 1142194 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| || || ||||| |||| | | ||| |||| || Sbjct 1142195 AACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 1142244 >seq100879 Length=438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | |||||||| ||||| ||| | ||| ||||| Sbjct 434 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCCAGT 375 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||||| || ||||||||| | || || || Sbjct 374 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 315 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || |||||||| |||| | | || | | ||||||||| Sbjct 314 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 255 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| || || ||||| |||| Sbjct 254 ATTCAGAAAGAGTCGACCCTGCACCTGGT 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411145031186177