Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_022233.1 Length=128367 Score E Sequences producing significant alignments: (Bits) Value seq236152 163 2e-35 seq221664 86.0 5e-12 >seq236152 Length=34290 Score = 163 bits (180), Expect = 2e-35 Identities = 324/477 (68%), Gaps = 2/477 (0%) Strand=Plus/Minus Query 99874 AATATAATAGTCATAGACGAAGCGGGACTTGTCCTGAGGCACATATTACACACGGTGGTC 99933 ||||||||||| ||||| |||| ||| ||||| | || ||||| || || || || || Sbjct 15423 AATATAATAGTGATAGATGAAGTTGGAGTTGTCTTAAGACACATTTTGCAAACAGTTGTT 15364 Query 99934 TTCTTTTACTGGTTCTATAACGCACTGTACGAGACGGATCTGTAC-AAGAGGAGGAGGAT 99992 || ||||||||||||||||||| ||||| | || || | ||| || | | | || Sbjct 15363 TTATTTTACTGGTTCTATAACGGTCTGTATAATACAGAATTATACCAACAACATTTG-AT 15305 Query 99993 ACCTTGCATCGTCTGCGTGGGTTCTCCCACGCAGACGGCGGCCATAAGGACATTGTATAA 100052 || || || ||||| || || ||||| ||||| | | || ||| |||| | || Sbjct 15304 TCCATGTATTGTCTGTGTTGGCTCTCCAACGCAAAGCGGAGCACTAATTACATCATTCAA 15245 Query 100053 CCCTCACACGCAGAATAAGGATGTGAGGAGGGGAGTGGATATCCTCTCTGCTCTGATAAG 100112 ||| ||| || || || | | | | | |||| | || | |||||||| | ||||| Sbjct 15244 TCCTATCACTCAAAACAAAGTTATCAAAAAGGGAATTAATGTTCTCTCTGCGTTAATAAG 15185 Query 100113 CGATCCCACGTTGCTATCCTACTGCAAGACCACAGACAACTGGGTCATCTTTATAAATAA 100172 ||| || || ||| || | || | | || ||| | |||||||| || || Sbjct 15184 TGATAAAACTCTGGCTGACTATTGTGACACGTCTAAGAATTGGATTATCTTTATCAACAA 15125 Query 100173 TAAGAGATGTGTCGATGTTGACTTTGGGAATCTCCTGAAATTTATAGAGTTTGGACTACC 100232 ||| |||||| || || ||||| ||| | | |||| ||| || ||||| |||| Sbjct 15124 TAAAAGATGTACTGACCCAGAATTTGGAAATTTGTTAAAATATATTGAATTTGGTTTACC 15065 Query 100233 GCTAGAGAAAGAACATATAGAGTACATTGACAGCTTTGTTAAGCCATCATCTTATATAAG 100292 | | |||||| || || ||||| | ||||| ||||| |||||| |||||| Sbjct 15064 TTTGAACCAAGAACTAATTAGTTATGTTGACCGATTTGTCAAGCCGGCATCTTTTATAAG 15005 Query 100293 GAATCCGTCTAATGATATAGATATGACAAGGTTGTTCATATCCCACAATGAGGTGCA 100349 ||||| || || || || || ||||||||||| ||| | || || || || || || Sbjct 15004 AAATCCATCAAACGAAATTGAAATGACAAGGTTATTCCTTTCTCATAACGAAGTACA 14948 Score = 116 bits (128), Expect = 3e-21 Identities = 221/320 (69%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 86161 CGCCTGCATCTGAATTCGACGTTTTTGAGAACGAACTGTGAAACGTGTTTCTGGTGTGCT 86220 || |||||| | || || || | ||| |||| | || ||||| |||||||| |||||| Sbjct 29197 CGTCTGCATTTAAAGTCAACTTCTTTT-GAACATAGTGAGAAACATGTTTCTGATGTGCT 29139 Query 86221 ACGTAACCTACGTTGAGTCCGACAATGTTTTTTAATAAAAAACTGATTATTGGTATAATA 86280 || || |||| ||| | ||| || ||||| |||||||| | || ||||| | |||| Sbjct 29138 ACATATCCTATGTTTATACCGTGTATATTTTTCAATAAAAAGCAAATGATTGGAACAATA 29079 Query 86281 AACCATGTCTTTCCGTGTCTTCTTGGTACTAGGAAAATCGAGACCTTTTG-TTTCAACTG 86339 ||||| || |||||||||||||| ||||||| |||| | || || ||| || | Sbjct 29078 AACCAGGTTTTTCCGTGTCTTCTAGGTACTAAAAAAACACTTGCTTTCTGCTTTAAAATT 29019 Query 86340 GTCTACCTGCGCGTCGCCTATGAAATCTATGTCTAGGATCTGTTTTATGTAGGGTATTGT 86399 | ||| | | ||| ||| |||| | | || ||| ||| ||| | | | Sbjct 29018 G-CTAGGTTTGTGTCATCTAGATCTTCTAGTCCAAACATGTGTATTAAGTATTTTGTAAT 28960 Query 86400 GTGATTGGTCAGTAGGGGCAGTTTCATTACGGCTAGGaaaaaaaCTACGTGTAATAGGAT 86459 |||||||| | | || | ||| || || |||| ||||||| ||| |||| || || Sbjct 28959 GTGATTGGCTATTGAAGGTAATTTGATAACAGCTA-TAAAAAAAATACATGTATCAGAAT 28901 Query 86460 AtttttttGAAACGGTTCCA 86479 ||| | ||||| ||||||| Sbjct 28900 GTTTCTCTGAAAAGGTTCCA 28881 >seq221664 Length=55698 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 45204 TCACTTCATCGCAGCTCATCTGAGAGAGCTCGACCGCCGCCCTAGCAACCTCGGAATCCC 45263 |||||||||| |||||| |||| |||| ||| ||||| | || || | ||||| Sbjct 10612 TCACTTCATCCTGACTCATCAGAGAAAGCTTCACCACCGCCTTCTGGACTTCAGTATCCC 10553 Query 45264 AGAACAACAATCTGACTATCTCCTTGACAATGTTCTTCACAAAAGGACAGGATGTCTTTC 45323 | || ||||| | | || || || |||| || || ||||| || |||||||| | Sbjct 10552 AAAATAACAAATTAATAATGTCTTTCACAACGTCTTTAACAAAGATGCAAGATGTCTTCC 10493 Query 45324 TAACGAGTTCTACGCCCTTCATGACAAGCTCGTCCGAATCAAACATCTTTCCCACA-TAC 45382 |||| | ||||| | || | ||| || |||| ||| ||||| ||| || Sbjct 10492 TAACTAACTCTACTCTTTTTAAGACGAGAGAACCCGACTCA----TCTTTACCAATGTAT 10437 Query 45383 CTCTTCTTACATATCAACATCAAGGGGAGGAACATCTTCTCAAACTCTAATTTGATAGG 45441 ||||||||||| |||| || || || | | || || ||||||||||| ||||| || Sbjct 10436 CTCTTCTTACAAATCATTATTAAAGGCACAGA-ATTTTTTCAAACTCTAACTTGATTGG 10379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408962039190312