Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq305757 89.7 4e-13 seq309042 84.2 2e-11 seq100879 84.2 2e-11 >seq305757 Length=1147529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || ||||| ||||| ||| | ||| ||| || | Sbjct 1142246 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCTAGT 1142305 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||| |||||||||||| | || || ||| Sbjct 1142306 GATACCATTGAAAACGTGAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 1142365 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| || || |||||||| || | | || | | || |||||| Sbjct 1142366 CAGAGGCTCATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1142425 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || ||||| || ||||| |||| Sbjct 1142426 ATTCAGAAAGAGTCGACCCTGCACCTGGT 1142454 >seq309042 Length=1952097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 |||||||| ||||| |||| ||| || || || ||||| || | | | || | ||| Sbjct 293170 GATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACATATTCTGTCTGAC 293229 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATT 107773 |||||||||||||||||| |||| || ||| | ||||||||||| Sbjct 293230 TACAACATTCAAAAGGAGCCTACTTTTCACCTTGTGTTGAGATT 293273 >seq100879 Length=438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || ||||| ||||| ||| | ||| ||| | | Sbjct 434 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCCAGT 375 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || ||||| |||||||||||| | || || ||| Sbjct 374 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 315 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || | | || |||||| Sbjct 314 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 255 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || ||||| || ||||| |||| Sbjct 254 ATTCAGAAAGAGTCGACCCTGCACCTGGT 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397237619405221