Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq304600 244 1e-59 seq315805 149 7e-31 seq314866 140 4e-28 seq307670 109 6e-19 >seq304600 Length=151085 Score = 244 bits (270), Expect = 1e-59 Identities = 612/927 (66%), Gaps = 7/927 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 ||| || |||||||| |||| ||| || | |||||||| || || | ||| || Sbjct 34746 CCAAGGCCTTATGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACGTCTA 34805 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 | || |||||||| ||||| | || || || || ||||| || | || || | Sbjct 34806 CGTCAAACTTGTTGGCGAATAAATGGTGT---TTGCGCAGCATCCAGTTCAAGTCGCCAG 34862 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| |||||||| || ||| ||| ||||| || | || || | Sbjct 34863 CTCCGAAAACGCACACGGAGCGCACGTGGACCCCGTCGCAGGGCGGGTAGGGTGCGCCCT 34922 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||||||||| |||| |||||||| || ||||||| | || |||||||| | Sbjct 34923 TGGAAACATCCCCCTCAAAGTACTGCCACTTGACAAACCTAGCAACTGCGTGCATGTCAG 34982 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||||||||| | | | | | | ||||| || | || | ||||| | | Sbjct 34983 ACAAGTCGTACTTATGGCTTAAGGAGAGTGAGCCAGGGACTTCAGGGATCCTCTGGATGG 35042 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || || | || ||||||||| |||| | || Sbjct 35043 TGGCCCAGAGATACTCATCTGGGCTGTAAGTGTCTTGCGCCCACTCCATAAACTTCTGGA 35102 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 || || | || | || ||||| ||| | || | |||||| || || | Sbjct 35103 TTTTTCCATTCTCCAGCACATACCCCACGTACTCCCTACTGACCACAAAGTAGGCACTGC 35162 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||| | || | | ||||| || |||| | |||||||| | | Sbjct 35163 CTGAAAAAAGAGGCGTTTCCAAGGGAGGACGCATTTTGACAGTCCCCGTGTTTGTCAGCT 35222 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | | ||| | | | || ||||||| | ||| ||| | | | Sbjct 35223 TTCCATTAATCACCTCATACCGTTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCT 35282 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 ||||||| || |||| ||| || | ||| ||| | ||||| ||||| |||| Sbjct 35283 CGGTCTCGAGGTTGTTTTCGCCCATTAACGACTTGAGCCTCCTGACCATTTCTAGGTTGG 35342 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | || | |||||| || | || || ||||| || | || |||| | | || | Sbjct 35343 TTTTGATGGGAAAATCCATCCCACAAAGATTTATCAAGTACCTCCAGTCTGCACTCATCG 35402 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || |||| | ||||| || |||||||| || |||||||| || || || || | Sbjct 35403 TGTAGAGGTCCTTCATGCAGTTGAGGTCGGCCTGAACCCGACTCCATGAGGCATAAACCA 35462 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838 | |||||||| | |||| || ||||| ||| ||| || || | || |||||||| | Sbjct 35463 CATTCTCCAACTGACTGGCCACGAAGACGTTGCTGAAGCAGGATGCGATGCCCATCACTG 35522 Query 162839 CCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896 | | | || ||| || | ||| | || ||||| | |||||| | |||||| || Sbjct 35523 CAGCTAAAAAGGAATCC--TCTGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGGGG 35580 Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956 |||||||||||||| | || |||| ||| || || || || || ||||| ||||| Sbjct 35581 CATATAGATGGCCCTCAGGAGCCTGTCGAGCATTTCAATTTTGTGATGAACCACTATAGA 35640 Query 162957 ATACGCTATGGGGAACTCAGCCTCCTC 162983 ||| |||||||| ||||| ||||| || Sbjct 35641 ATATGCTATGGGAAACTCCGCCTCTTC 35667 >seq315805 Length=407868 Score = 149 bits (164), Expect = 7e-31 Identities = 200/276 (72%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 171812 CCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAA 171871 ||||| ||||| || | |||||| |||| ||||| ||||| | |||| ||||| || Sbjct 109067 CCAAAGGTATTGAAGAGACACATGTAACACCCTTCATCCTCTAAGGTGACATTCCAGAAG 109008 Query 171872 GTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGC 171931 || | || || ||| |||||| || || || ||||| | | || ||| || | |||| Sbjct 109007 GTGATGGTTGAGTTTTGGAGTCCCAGCTGGGTGATGTTTAACTTGTTCTTATAGGCAGGC 108948 Query 171932 TGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTT 171991 ||||| || || ||||| ||||| ||| | ||||| | |||||| ||||| |||| | Sbjct 108947 TGGACCACCACCCCGTGTTTCTCACTGTAGGTGGCTACGTTTTCTGGGCTTAAAGCCGTC 108888 Query 171992 ATCTTCTGCCACGTTACTATTAAAAC-TTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGA 172050 | |||||||| || || | || || |||| | || | | ||||||||| |||| || Sbjct 108887 TTTTTCTGCCATGTCACAACCAAGACGTTCTGGGAAGGCT-GCAGAGAGCATTTTAAGGA 108829 Query 172051 AGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGT 172086 ||||||||||| || || ||||| ||||| || Sbjct 108828 AGCAGGTGTGTACAGCTGCTCTCTTTCATCTTGGGT 108793 Score = 114 bits (126), Expect = 1e-20 Identities = 183/257 (71%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 171505 AGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTT 171564 ||||||||||| ||| || || || |||| ||| | || | ||| ||||| |||| | Sbjct 111717 AGTTTGTCTGAAGTCGGTCACCGTGCCCAGGTGCAGCACCTGGCAGATCACTTCCT---T 111661 Query 171565 TCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTT 171624 ||||| || | || || ||||| || ||||| | || ||||||||||| |||||||| Sbjct 111660 CCCCACCTGGTTCTTGGGGTCTTTGACATGAAGGACACTGGTAACAGATGTGGTCCCGTT 111601 Query 171625 ACGA-TGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATA 171683 ||| || || | || || ||||| || || || || | | || ||||| | | Sbjct 111600 -CGAGTGAGGAGAAATCTTGGTGCTATTGTCAATACCTGACACAGGGACCTTCCAGGAGA 111542 Query 171684 TAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTC-GAAGAAC 171742 | | |||||||| | ||||| ||||||||||| || |||| | |||||| || | || Sbjct 111541 TTATGGGAGCTGGACGGGCAGTGGCAGAGCAAGTGATATTTAGGCGATCTTCAGATGCAC 111482 Query 171743 TCATAGTGTAATGACAC 171759 | ||||| | ||||| Sbjct 111481 T-GTAGTGAAGGGACAC 111466 >seq314866 Length=1018640 Score = 140 bits (154), Expect = 4e-28 Identities = 393/592 (66%), Gaps = 15/592 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| |||||| | || ||||| |||| | || || | | | Sbjct 496611 TCCAGTTAAAGTAACTAAGATATAATGTATTATTTTTGTCGACTTCCTTCAGATACTTTG 496552 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 496551 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 496492 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || || | ||| || || | ||||| | || |||| | || Sbjct 496491 TCTCATAGTTTTCCCTAGACGGTCCCAGAACAACAGGTACAGAGCCAGCCAGGAAAGCAT 496432 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||||| ||||| ||||| || || |||| | ||||| ||||| | ||||| |||| Sbjct 496431 TATAGAGCTTTTCAGTAATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 496372 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||||| ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 496371 TACAGGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 496314 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || |||| ||| || || || || | | Sbjct 496313 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTTATTGTAATA-CTTGACCCTGGCAT 496255 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 496254 GTTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 496200 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 496199 TTCAAACACAAAAG-GGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 496141 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420 ||||||| | ||| || | || || ||||| | || ||| ||||| || ||| Sbjct 496140 AGTCGCGGCGGTATGTGAGAGTCAGGTTGAACAAGTGTTCAATACCGCTCTTCTGGGGAG 496081 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472 ||| | | || ||||| | |||||||| ||||| || || |||| ||| || Sbjct 496080 TGTGAGTTGGTGATTCCAGATTCATCCAAATCCATTTCTGGAAGGGTGGCCT 496029 >seq307670 Length=1603115 Score = 109 bits (120), Expect = 6e-19 Identities = 231/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 || || ||||| ||||| || | ||||| || | || || ||||| || | || ||| Sbjct 112729 ACAATTTCTAGGTTGGTTTTGATAGGAAACTCCATCCCACAAAGATTTATCAAGTACTTC 112788 Query 162703 CACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTC 162762 || | | | | ||| | ||| | ||||| || || || || || ||||| Sbjct 112789 CAGTCTGCCTTCATCGTGTAGGGGTCCCTCATGCAGTTGAGGTCAGCTTGAACTTGACTC 112848 Query 162763 CACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAA 162822 || || || | || || | ||||||| | | || ||||||||||| |||||| || Sbjct 112849 CATGATGCAAAAACCACACCCTCCAACTGACTAGCCACAAAGACATTACTGAAACAGGAT 112908 Query 162823 ACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGC 162880 | || |||||||| || | |||| ||| || | || || ||||| | || Sbjct 112909 GCGATGCCCATCACCGCAGCTAAGAAGGAATC--CTCTGACTTTGAGTCCACGTGAATGC 112966 Query 162881 AGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTAT 162940 |||| | ||||||| | |||||||||| |||| | || || | ||| || || || | Sbjct 112967 AGTAGACATTCTGATGCATGTAGATGGCCGTCAGGAGCCTGTCAAGCATTTCAATTTTGT 113026 Query 162941 GGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | || ||||| ||||| || |||||||| ||| | ||||| || Sbjct 113027 GATGGACCACTATAGATTATGCTATGGGAAACCCCGCCTCTTC 113069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575993988654400