Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq130668 102 8e-17 seq316284 91.5 1e-13 seq305757 86.0 6e-12 seq100879 86.0 6e-12 seq316040 84.2 2e-11 seq303727 84.2 2e-11 >seq130668 Length=27386 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| ||||| || | | | |||||||| || ||||||||||| || ||| || Sbjct 10036 CAAACGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 9977 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| |||| | |||| || | ||| || || ||||| |||||||| Sbjct 9976 TCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTC 9917 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| || | | || | || ||| | ||||| || || | || Sbjct 9916 CTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGT 9857 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || |||||||| || || | ||| |||||||| Sbjct 9856 GATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | |||||||| || ||||||||||| || ||| ||| Sbjct 9576 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 9517 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| || | ||| || || ||||| |||||||| || Sbjct 9516 TCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 9457 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| || | | || | || ||| | ||||| || || | || | Sbjct 9456 TCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 9397 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| || || | ||| |||||||| Sbjct 9396 GTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | |||||||| || ||||||||||| || ||| ||| Sbjct 9804 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 9745 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| || | ||| || || ||||| ||||| || || Sbjct 9744 TCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTG 9685 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| || | | || | || ||| | ||||| || || | || | Sbjct 9684 TCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 9625 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| || || | ||| |||||||| Sbjct 9624 GTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9590 >seq316284 Length=490044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| | |||||| | ||||| ||||||||||| ||| ||| | || ||||| ||| Sbjct 81496 TACTCTATGATTTCTGTACACAGATTGCTGCATTTGATGGTTCCTATGTTCTGCTGGTTG 81555 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 ||||||||||| || || |||||| ||||||||||||| Sbjct 81556 CTTTTCCGATTACAGGCATCTTTGTAGAGCATGTACGG 81593 >seq305757 Length=1147529 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | |||||||||| || |||||||| || | || || | Sbjct 1142232 CGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 1142173 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || ||||| |||||||||||| Sbjct 1142172 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 1142113 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | ||||| | ||||| || || | || | Sbjct 1142112 TCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACCTCTAGGGTGATG 1142053 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| ||||| | ||| |||||||| Sbjct 1142052 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 1142018 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| || | | | |||||||| ||||||||||| || | || || |||||| Sbjct 1142455 AACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 1142396 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || || | | | || || | ||| || || ||||| |||||||||||||| Sbjct 1142395 CAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTG 1142336 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || |||| | ||| | ||||| | ||||| ||||| | || | || || Sbjct 1142335 GATCTTAGCCTTCACGTTTTCAATGGTATCACTAGGCTCAACTTCTAGGGTGATGGTCTT 1142276 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || || | ||||||||||| Sbjct 1142275 GCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 >seq100879 Length=438 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| || | | | |||||||| ||||||||||| || | || || |||||| Sbjct 225 AACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 284 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || || | | |||| || | ||| || || ||||| |||||||||||||| Sbjct 285 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTG 344 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || |||| | || | ||||| | ||||| ||||| | || | || || Sbjct 345 GATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACTTCTAGGGTGATGGTCTT 404 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || || | ||||||||||| Sbjct 405 GCCGGTCAGGGTCTTCACAAAAATCTGCAT 434 >seq316040 Length=1005281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| |||| || | | | |||||||| || ||||||||||| | || Sbjct 910474 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGAGTG 910415 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || |||||||| || | | | || |||||||| || || || || ||||| Sbjct 910414 CGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGAATGCCC 910355 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||||| ||| | | || | || || | ||||||||||| | Sbjct 910354 TCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCAAGG 910295 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || ||||| |||||||| Sbjct 910294 GTGATTGTCTTGCCCGTGAGGGTCTTCATGAAGATCTGCAT 910254 >seq303727 Length=1188818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||||||||||||||| || ||||| |||||| || || || || | | Sbjct 949477 GATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 949418 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| || || || | Sbjct 949417 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 949358 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | || || || || || ||||| Sbjct 949357 TTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTC 949298 Query 132110 ATGAAAATCTGCAT 132123 |||||||||||||| Sbjct 949297 ATGAAAATCTGCAT 949284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474602349326040