Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq307029 105 2e-19 seq304069 95.1 4e-16 seq314766 91.5 5e-15 seq126784 87.8 6e-14 seq314890 78.8 3e-11 >seq307029 Length=1133656 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 659616 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 659557 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 659556 CCCGGGTTTCGGC 659544 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 678786 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 678727 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 678726 CCGGGTTTCGGC 678715 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 814897 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 814838 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 814837 CCGGGTTTCGGC 814826 >seq304069 Length=458166 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||| ||||||||| | | Sbjct 352946 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCTGGTTCGATC 353005 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 353006 CCGGGTTTCGGC 353017 >seq314766 Length=770887 Score = 91.5 bits (100), Expect = 5e-15 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250898 GCTGAGATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 250844 >seq126784 Length=13557 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||| ||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 567 TAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 510 >seq314890 Length=635219 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||| ||| |||| |||||||||| ||||||| || |||||||||||||||||||| Sbjct 549458 GCTGAAATAGTTCAGGTGGGAGAGCACTAGACTGTAGCTCTAAAGGTCCCTGGTTCAA 549401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15791146600905