Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq315805 224 1e-53 seq314877 163 3e-35 seq301931 154 2e-32 seq306503 127 2e-24 seq314221 113 5e-20 >seq315805 Length=407868 Score = 224 bits (248), Expect = 1e-53 Identities = 226/294 (77%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 171077 GACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTGCAGAC 171136 |||||| ||||| || | || |||| |||| || || ||| | |||||||| |||||| | Sbjct 108792 GACCCAAGATGAAAGAGAGCAGCTGTACACACCTGCTTCCTTAAAATGCTCTCTGCAGCC 108851 Query 171137 TTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAGAACAT 171196 ||| ||| | || || |||| || |||||||||| | | | | ||||| ||| | Sbjct 108852 TTCCCAGAACGTCTTGGTTGTGACATGGCAGAAAAAGACGGCTTTAAGCCCAGAAAACGT 108911 Query 171197 GATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAGATAAA 171256 || | || | | |||||||||||||||||||| || |||||| ||||| |||| Sbjct 108912 AGCCACCTACAGTGAGAAACACGGGGTGGTGGTCCAGCCTGCCTATAAGAACAAGTTAAA 108971 Query 171257 CATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTAGAGGA 171316 |||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||| Sbjct 108972 CATCACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATGTCACCTTAGAGGA 109031 Query 171317 CGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGG 171370 || ||||| |||| || ||||| || |||||||| ||||| ||||| || Sbjct 109032 TGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTATGGGGAAGATCTCAGG 109085 Score = 125 bits (138), Expect = 8e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 171428 TGATGACCACCTGAACATCACCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTG 171487 ||| || | ||| || ||||| || ||||||| |||||| || | || || | || Sbjct 111489 TGAAGATCGCCTAAATATCACTTGCTCTGCCACTGCCCGTCCAGCTCCCATAATCTCCTG 111548 Query 171488 GAAGATTTCGGGGTCAGAAATTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAAC 171547 |||| | | | ||||| ||||| || || | | || || | | || || || || || Sbjct 111549 GAAGGTCCCTGTGTCAGGTATTGACAATAGCACCAAGATTTCTCCTCACTCGAACGGGAC 111608 Query 171548 TACTTCTGTAACCAGTGTACTCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGT 171607 || ||||| |||||||| || || || ||||||||||||| ||| |||| ||||| || Sbjct 111609 CACATCTGTTACCAGTGTCCTTCATGTCAAAGACCCCAAGAACCAGGTGGGGAAGGAAGT 111668 Query 171608 TATCTGCCAAGTGTGGCACCTGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGG 171667 |||||||| ||| ||||||||| | || || |||| || ||||| | ||| | || Sbjct 111669 GATCTGCCAGGTGCTGCACCTGGGCACGGTGACCGACTTCAGACAAACTCTGAGCCAAGG 111728 Query 171668 TA 171669 || Sbjct 111729 TA 111730 >seq314877 Length=772221 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | |||||||| |||||||| Sbjct 564764 CTTCAGGCCTGTGATGTGTGCGATCATGTATGTGAGCAGGGCATAGCTGGCGATGTTGAA 564823 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||||||||||||| || |||||||||||||||||||| || ||||| |||| Sbjct 564824 AGGTACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 564883 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| ||||| || ||||||||||| Sbjct 564884 CACCACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 564928 >seq301931 Length=702487 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 128559 AGGGTTACCTGGGTTGCCAAGCCTTGTCCGAGATGATCCAGTTTTACCTGGAGGAGGTGA 128618 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| || | ||| ||| | |||||||| || |||| Sbjct 128619 TGCCCCAAGCTGAGAACCA------------TGACCCAGACGTCAAGGAGCACGTGAACT 128666 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||||| || ||||||||||||| ||| Sbjct 128667 CCCTGGGGGAAAAGCTGAAGACCCTCAGGATGAGGCTGCGGCGCTGT 128713 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | || || |||||||| |||||||||||||| || || || ||||||| Sbjct 131062 AGCTCCAAGAGCAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 131121 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 131122 TAGAAGCCTACATGACAA 131139 >seq306503 Length=59306 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||||||||| ||| | |||| || |||||||||| ||||||| |||| |||||| | Sbjct 28367 GTACTCTCTGGTATTTGTCATTGGCCTGATTGGCAATGTCCTGGTGGTCCTGGTCCTCGT 28308 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | || |||||||||| | ||||||| ||||| ||| ||||||||||| || || Sbjct 28307 GCAATATAAGAGGCTCAAAAGCATGACCGGCATCTACCTCCTCAACCTGGCCTTTTCCGA 28248 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| ||||| |||| Sbjct 28247 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATCCACT 28210 >seq314221 Length=960332 Score = 113 bits (124), Expect = 5e-20 Identities = 203/297 (68%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 8617 CTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTAC 8676 |||||||| | |||| || | ||||||| ||||| | | |||| | ||| ||| Sbjct 30923 CTGGTGTTCATCATTGGTCTCCTGGGCAATGTGGTGGTGGTGGTGATCCTTACAAAATAC 30982 Query 8677 AAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTG 8736 | |||||| | || ||||||||||||| |||| ||||| ||||| || ||| |||| Sbjct 30983 AGAAGGCTCCGAATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCCGACTTGCTC 31042 Query 8737 CTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGGGTGGGAC 8796 | | ||||| ||||| || ||||||||| || | || || | || ||||| Sbjct 31043 TTCCTCTTCACTCTCCCGTTCTGGATTCACAGCCTCACGTGG------GATGAGTGGGTT 31096 Query 8797 GCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTACAGCGAA 8856 | || |||||||||| | | |||| |||| || ||| ||||||| || Sbjct 31097 TTTGGTCATTGCATGTGTAAGCTCTTGATGGGGCTTTATTACCTGGGCTTGTACAGTGAG 31156 Query 8857 GTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGCGGTG 8913 || | || ||||||||| |||| | |||||||| || || | || |||| ||| Sbjct 31157 ATCTTTTTCATCATCCTGCTGACCATTGACAGGTACCTGGCGATCGTCCACGCTGTG 31213 Score = 93.3 bits (102), Expect = 5e-14 Identities = 165/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 9196 GCCGTCAAGCTCATTTTG---ATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTAC 9252 ||| ||| ||||||||| ||||||||||| |||| || | || |||| |||||| Sbjct 31505 GCCATCAGGCTCATTTTTGTTATCATGGTGGT-CTTT--TTCATTTTCTGGACACCCTAC 31561 Query 9253 AACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGC-CAGACTGTGAAGC 9311 ||| | | ||| || | | | |||| | | |||||| ||| |||||| Sbjct 31562 AACCTGGTTCTCCTTCTGTCTGCTTTCCAAATTACGTTCTTTGGGAACAG-CTGTGAC-- 31618 Query 9312 GCGGCGCAGGG---TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTG 9368 ||| ||| | ||||||||||| ||| | ||| ||||||||| ||| ||||| Sbjct 31619 -CGGAGCAAAGATCTGGACATGGCCAAGCAGGTTACAGAGGTGATCGCCTACACACACTG 31677 Query 9369 CTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 |||||||||||| || ||||| || || ||||| |||| |||||| || |||| Sbjct 31678 CTGCGTCAACCCAGTGATCTATGCCTTCGTGGGTGAAAGGTTCCAGAAGCACCT 31731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581028678309600