Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq303727 104 2e-17 seq92613 100 3e-16 seq126465 98.7 9e-16 seq316040 96.9 3e-15 seq305757 96.9 3e-15 seq131556 96.9 3e-15 seq100879 95.1 1e-14 seq315406 91.5 1e-13 seq306752 89.7 5e-13 seq309042 84.2 2e-11 seq301535 84.2 2e-11 seq317611 82.4 7e-11 >seq303727 Length=1188818 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| ||||||||||||||||| || | | Sbjct 949510 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 949451 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 949450 AGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 949391 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | || || | ||| ||| Sbjct 949390 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 949331 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | ||||||| || |||||||| Sbjct 949330 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 949284 >seq92613 Length=686304 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 35504 TTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAA 35563 ||| | |||||||| | |||||||| | ||| | ||| |||||||||||||||||| Sbjct 590146 TTAGTACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAG 590087 Query 35564 TCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCC 35623 || | || || | | || ||||| | ||| || ||||| |||| | ||||| || Sbjct 590086 TCAGACAGAGTATGTCCATCTTCCAGTTTCTTGCCAGCAAAGATCAGTCTTTGCTGATCA 590027 Query 35624 GAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT 35683 | |||| || ||||| ||| |||||| ||||| | || | | || || | | Sbjct 590026 GGAGGAGTTCTTTCCTTATCCTGGATCTTAGCCTTCAAATTTTCTATTGTATCCAAGGCT 589967 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| | ||||| || || |||| | ||||||| ||| || ||||| Sbjct 589966 TCAACCTCAAGAGTGATGGTCTTCCCCGAAAGGGTTTTCAGAAAAATGTGCAT 589914 >seq126465 Length=199800 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| ||||||||||||||||| || | | Sbjct 39098 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 39039 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 39038 AGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 38979 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | || || | ||| ||| Sbjct 38978 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 38919 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | | ||||| || || ||||| | ||||||| || |||||||| Sbjct 38918 TTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 38872 >seq316040 Length=1005281 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/208 (72%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || |||||||| || |||||||| Sbjct 910445 CTCTTTCTGGATGTTGTAGTCTGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 910386 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| ||||||||||| | |||| || ||||||||| ||| ||| || || | | Sbjct 910385 TATCAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGACAT 910327 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| || | ||||| || | ||||| || || ||||| | || |||| Sbjct 910326 TCTCGATGGTGTCACTGGGCTCCACTTCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCA 910267 Query 35724 CAAATATCTGCAT-TCT--GTGCGCACA 35748 || |||||||| ||| || |||||| Sbjct 910266 TGAAGATCTGCATCTCTGCGTCCGCACA 910239 >seq305757 Length=1147529 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 1142209 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1142150 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | | Sbjct 1142149 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 1142090 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || ||||| | ||||| || || || |||| |||||||| Sbjct 1142089 CTCGATGGTATCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 1142030 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 1142029 GAAGATCTGCATTTTG 1142014 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 1142437 CTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1142378 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | Sbjct 1142377 AATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTCACGTT 1142318 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || || | || || || | ||||| || || || |||| || ||||| Sbjct 1142317 TTCAATGGTATCACTAGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1142258 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1142257 AAAAATCTGCAT 1142246 >seq131556 Length=230148 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||||||||| || | | Sbjct 29437 CCACCACGAAGTCTCAACACAACATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 29378 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 29377 AGAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 29318 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || |||||| ||| | | || | || ||||| | || ||| Sbjct 29317 ATTCCTTCCTTATCTTGGATCTTGGTCTTTACATTTTCTACTGTGTCTGGAGGTTGAACC 29258 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 || | ||||| || || || || | ||||||| || ||||||| Sbjct 29257 TCGAGAGTGATGGTCTTCCCGGTAAGGGTTTTCATGAAAATCTGCA 29212 >seq100879 Length=438 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 243 CTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 302 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | | Sbjct 303 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 362 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || || || | ||||| || || || |||| || ||||| Sbjct 363 CTCGATGGTATCACTGGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 422 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 423 AAAAATCTGCAT 434 >seq315406 Length=587182 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| ||||| | ||| ||||| |||||||||||| || | | Sbjct 211865 CCACCACGAAGTCTCAACACAAAATGAAGAGTAGACTCCTGTTGAATGTTGTAGTCAGAC 211806 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | | || ||||| ||||| || ||||| |||| | |||| || | |||| Sbjct 211805 AGAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAATCTGGAGGA 211746 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| ||| ||||| ||| | | || | | || || | ||| || Sbjct 211745 ATTCTTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCC 211686 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC 35734 || | ||||| || || ||| | | |||||||| || |||||| Sbjct 211685 TCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGC 211641 >seq306752 Length=244776 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| |||| ||| | ||| | ||| | ||||||||||||||| || | | Sbjct 147194 CCACCACGACGTCTCAGCACAAGATGAAGAGTAGATTTCTTTTGAATGTTGTAGTCAGAC 147135 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | | || ||||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 147134 AGAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 147075 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | || || | ||| ||| Sbjct 147074 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 147015 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | ||||||| || |||||||| Sbjct 147014 TCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 146968 >seq309042 Length=1952097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 35511 CACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCA 35570 ||||| | || |||||||| | || || ||| |||||||||||||||||| || | || Sbjct 293281 CACCAGGAAATCTCAACACAAGGTGAAAAGTAGGCTCCTTTTGAATGTTGTAGTCAGACA 293222 Query 35571 AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630 | | | || ||||| ||||| || ||||| |||| | ||||| || | ||||| Sbjct 293221 GAATATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAA 293162 Query 35631 CGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCT 35690 | ||||||||| ||||||| ||| | | || | || || | ||| |||| Sbjct 293161 TTCCTTCCTTGTCCTGGATCTTTGCCTTTACATTTTTTATAGTATCCAAGGGTTCAACCT 293102 Query 35691 CCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || || || | || | ||||||| ||||||||||| Sbjct 293101 TGAGAGTAATGGTCTT-CTTGTAAGGGTTTTCATGAATATCTGCAT 293057 >seq301535 Length=375596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | ||||| | || | |||||||| | ||||| Sbjct 345154 CTCTTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCATCTTTTAGCTGCTTGTCTGCAAA 345095 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || ||| ||||||||| ||| | | || || ||| |||||| ||||| | | Sbjct 345094 GATGAACTTCTGCTGGTCAAGAGGGATGTCTTCTTTATCCTGGATCTTGGCCTTCACATT 345035 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || | ||||| || || ||||| | |||||||| |||| Sbjct 345034 CTCGATGGTATCACTGGGCTCTATCTCCAGAGTTATGGTTTTGCTGGTCAAAGTCTTCAT 344975 Query 35725 AAATATCTGCATTCTG 35740 ||| |||||||||||| Sbjct 344974 AAAGATCTGCATTCTG 344959 >seq317611 Length=13991 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||||||||| | | | || | || |||||||| | || ||||| Sbjct 9674 TCTTTCTGGATGTTGTAATCAGAAAGAATACGGCCATCTTCCAGCTGAATGCCTGCAAAG 9733 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 | ||||| ||||||||| ||||| | || || || || |||||| ||||| | | Sbjct 9734 ACCAACCTCTGCTGGTCAGAAGGGATGCCTTCTTTACCCTGGATCTTGGCCTTCACATTC 9793 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | || || || | || ||||| | || || || ||||| |||| ||| ||||| Sbjct 9794 TAAATGGTATCACTGGGCTCAACCTCTAGGGTTATGGTCTTACCAGTCAGGGTTCTCACA 9853 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 9854 AAGATCTGCATTTTG 9868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448893566960120