Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq315408 113 6e-20 seq302530 87.8 3e-12 >seq315408 Length=2248345 Score = 113 bits (124), Expect = 6e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| | ||||| || ||||| ||| | ||| |||| |||| ||||||||| Sbjct 1254585 TGGGGCAGGAGGTCTTTGGGCTGGTGCCTGGTCTGATGATGTATGCCACAATCTGGCTGC 1254644 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | || |||||||| || ||||||||||| ||||| ||||| || |||||| | || || | Sbjct 1254645 GGGAACACAACAGAGTGTGCGACGTGCTCAAACAGGAGCATCCAGAATGGGATGATGAGC 1254704 Query 214212 AGCTGTTCCAGA 214223 || ||||||||| Sbjct 1254705 AGTTGTTCCAGA 1254716 >seq302530 Length=775761 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| ||||||| || | ||||| ||||| | || |||| |||||||| Sbjct 46160 TGGGCCAGGAGGTGTTTGGGCTGCTTCCCGGGCTCATGCTCTATGCCACGCTCTGGCTGC 46101 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||| ||| | || || ||| ||||||| |||||||| ||| ||||||| | Sbjct 46100 GTGAGCATAACCGTGTGTGTGACCTGCTGAAGGCTGAGCACCCCACCTGGGACGACGAGC 46041 Query 214212 AGCTGTTCCAGATCACTCGTTTAATC 214237 |||||||||||| || ||| | ||| Sbjct 46040 AGCTGTTCCAGACAACCCGTCTCATC 46015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720292017987360