Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq305757 91.5 1e-13 seq100879 87.8 2e-12 >seq305757 Length=1147529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| ||||| || | |||| | ||||| ||||| || || Sbjct 1142442 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1142383 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| | ||| || || || || | || |||||||| |||||| ||| Sbjct 1142382 GCAAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTC 1142323 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | || || | | ||||||||||| || || | ||||| ||||| || Sbjct 1142322 ACGTTTTCAATGGTATCACTAGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 1142263 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||| || |||||| Sbjct 1142262 TTCACAAAAATCTGCATA 1142245 >seq100879 Length=438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| ||||| || | |||| | ||||| ||||| || || Sbjct 238 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 297 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| || || || || | || |||||||| ||||||| ||| Sbjct 298 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 357 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || ||| ||||||||||| || || | ||||| ||||| || Sbjct 358 ACATTCTCGATGGTATCACTGGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 417 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||| || |||||| Sbjct 418 TTCACAAAAATCTGCATA 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423188135934168