Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq239618 325 1e-84 seq304409 178 5e-40 >seq239618 Length=4655 Score = 325 bits (360), Expect = 1e-84 Identities = 180/180 (100%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22642 ACGGTCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCA 22701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3381 ACGGTCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCA 3440 Query 22702 ACTGACTGAAATGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTA 22761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3441 ACTGACTGAAATGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTA 3500 Query 22762 TATCCAGTGAtttttttCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCA 22821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3501 TATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCA 3560 >seq304409 Length=977568 Score = 178 bits (196), Expect = 5e-40 Identities = 113/123 (92%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22473 CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA 22532 |||||| |||||||||||| | |||||| |||||| || |||||||||||||||||||| Sbjct 855704 CGATGACAACGTTTCAGTTGGATCATGGGGAACGGTCTACCAAGGGTGAACACTATCCCA 855645 Query 22533 TATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCG 22592 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| Sbjct 855644 TATCACCAGCTCACCGTCTTTCATTGCCATACGGAACTCCGGATGACCATTCATCATGCG 855585 Query 22593 GGC 22595 ||| Sbjct 855584 GGC 855582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183706261002702