Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq99455 105 7e-18 seq303989 91.5 2e-13 seq303980 91.5 2e-13 seq96983 84.2 2e-11 seq301619 82.4 8e-11 >seq99455 Length=49306 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 24806 CGTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTG 24747 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||| ||||| | |||||| ||||| ||| ||||| ||||||||||||||||| | Sbjct 24746 ACCAATGGGCTGCAAGAGGTTCAGGTTATTGCTACCCACAAAATTCTGAGCCAAATTGAT 24687 Query 152148 AATCGT 152153 ||| || Sbjct 24686 AATGGT 24681 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 24805 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 24746 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||||||||| ||| |||||||| || |||||||| |||| | Sbjct 24745 CCAATGGGCTGCAAGAGGTTCAGGTTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 24686 Query 117425 ATCGT 117429 || || Sbjct 24685 ATGGT 24681 >seq303989 Length=535067 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 320198 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 320139 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || |||||| |||||||||||||| || |||||||| Sbjct 320138 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 320079 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 320078 ACAACACGTT 320069 >seq303980 Length=2175919 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||| | |||||||||||| ||||||||| ||| || || || || || Sbjct 844384 GTGAAAATATAACGGGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 844443 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | | | | |||||| ||||||||||| |||||||| || ||| Sbjct 844444 CCAATAGGCTGAAGCAAGCTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTTACA 844503 Query 117425 ATCGT 117429 || || Sbjct 844504 ATAGT 844508 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || |||| ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 844384 GTGAAAATATAACGGGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 844443 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | | | | |||||| ||||| || |||||||||||||| ||| Sbjct 844444 CCAATAGGCTGAAGCAAGCTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTTACA 844503 Query 152149 ATCGT 152153 || || Sbjct 844504 ATAGT 844508 >seq96983 Length=126056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | || ||||||||||| || | ||||| Sbjct 32465 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 32406 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | ||| || || ||| || || || |||||| || ||||| ||| ||||||| Sbjct 32405 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 32346 Query 74890 CGAC 74893 | || Sbjct 32345 CCAC 32342 >seq301619 Length=432943 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 74767 AGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCT 74826 |||| ||||||||||| || | |||||| | ||| | ||||||||||| ||||| | | Sbjct 188710 AGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGCCAGGCATCAGTCCTCATT 188769 Query 74827 TCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAA 74886 |||| | ||| || || | || |||||| ||| |||||||||| || |||| Sbjct 188770 TCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATGCCTTCCACTGCAGCAA 188829 Query 74887 AGGCGACAAGGCGTT 74901 |||| |||| |||| Sbjct 188830 AGGCTACAACACGTT 188844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544909559802200