Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq304600 150 2e-31 seq307670 107 3e-18 >seq304600 Length=151085 Score = 150 bits (166), Expect = 2e-31 Identities = 562/872 (64%), Gaps = 17/872 (2%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| ||||||||||| || || || || ||| | || ||||| || || ||| || Sbjct 35667 GAAGAGGCGGAGTTTCCCATAGCATATTCTATAGTGGTTCATCACAAAATTGAAATGCTC 35608 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||||||||||||||||| || ||||| |||||||| | ||||||||| Sbjct 35607 GACAGGCTCCTGAGGGCCATCTATATGCCCCAGAATTTCTACTGCATTCACGTGGACAAA 35548 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTG 13862 || || | || || | | || || |||||| |||||| ||||| Sbjct 35547 AAATCAGAGGATTCCTTTTTAGCTGCAGTGATGGGCATCGCATCCTGCTTCAGCAACGTC 35488 Query 13863 GCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGAC 13922 | ||||| | | || | | ||||| || | ||| |||||||| || ||||||||| Sbjct 35487 TTCGTGGCCAGTCAGTTGGAGAATGTGGTTTATGCCTCATGGAGTCGGGTTCAGGCCGAC 35428 Query 13923 CTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTG 13982 |||| ||||||| |||||| || | | | ||||||||| || | || || Sbjct 35427 CTCAACTGCATGAAGGACCTCTACACGATGAGTGCAGACTGGAGGTACTTGATAAATCTT 35368 Query 13983 TGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTG 14042 || |||||||| || || |||| |||||||| || || || || ||| ||| | | Sbjct 35367 TGTGGGATGGATTTTCCCATCAAAACCAACCTAGAAATGGTCAGGAGGCTCAAGTCGTTA 35308 Query 14043 GGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCAC--AAGCTGCACCGCATCA 14100 ||| | ||| ||| |||| |||| | ||||| | ||| ||| | | | Sbjct 35307 ATGGGCGAAAACAACCTCGAGACCGAGAGGATGCC-ATCCAATAAAGAAGAAAGGT---- 35253 Query 14101 GGAAGA---GGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGGAACAAGG 14157 |||| | || | | |||| | || | || ||||| || | ||| Sbjct 35252 GGAAAAAACGGTATGAGGTGATTAATGGAAA---GCTGACAAACACGGGGACTGTCAAAA 35196 Query 14158 CCCCGCCGCCGCTCAGGATCCCCA-TCTTTGCGGGAAACGCTTACTTTGCGGTCACCCGG 14216 | || || || | | | || | ||| | || | || ||||||| ||||| || Sbjct 35195 TGCGTCCTCC-CTTGGAAACGCCTCTTTTTTCAGGCAGTGCCTACTTTGTGGTCAGTAGG 35137 Query 14217 GAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCGAG 14276 |||| ||||| | || || || | | | | | ||| | ||| | Sbjct 35136 GAGTACGTGGGGTATGTGCTGGAGAATGGAAAAATCCAGAAGTTTATGGAGTGGGCGCAA 35077 Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 ||||| |||||||| || ||| | || ||||||||| | ||||| || | | | ||| Sbjct 35076 GACACTTACAGCCCAGATGAGTATCTCTGGGCCACCATCCAGAGGATCC-CTGAAGTCCC 35018 Query 14337 GGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTT 14395 || | | | || | | ||||||||| || |||||| || | ||||| Sbjct 35017 TGGCTCACTCTCCTTAAGCCATAAGTACGACTTGTCTGACATGCACGCAGTTGCTAGGTT 34958 Query 14396 CGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGA 14455 ||||||||||| |||| ||||||||| | || || || | |||||||| ||||| Sbjct 34957 TGTCAAGTGGCAGTACTTTGAGGGGGATGTTTCCAAGGGCGCACCCTACCCGCCCTGCGA 34898 Query 14456 CGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGAG 14515 ||| ||||||| | | || | ||| | ||||| | |||||| |||| ||| || | | Sbjct 34897 CGGGGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCTGGCGACTTGAACTGGATGCTGCG 34838 Query 14516 CGTCCCGCACCTGTTCGCCAACAAGTTCGACG 14547 | | || | |||||||||||||| |||| Sbjct 34837 CAAACACCATTTATTCGCCAACAAGTTTGACG 34806 >seq307670 Length=1603115 Score = 107 bits (118), Expect = 3e-18 Identities = 232/348 (67%), Gaps = 12/348 (3%) Strand=Plus/Minus Query 13682 GGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTT 13741 |||||||| | ||||||||| || || || || ||| |||| ||||| || || ||| | Sbjct 113070 GGAAGAGGCGGGGTTTCCCATAGCATAATCTATAGTGGTCCATCACAAAATTGAAATGCT 113011 Query 13742 CGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTC 13801 || | ||||||| |||||||||| | ||||| |||||||| | ||||||||||| Sbjct 113010 TGACAGGCTCCTGACGGCCATCTACATGCATCAGAATGTCTACTGCATTCACGTGGACTC 112951 Query 13802 CAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGT 13861 ||||| | || ||| | | || || |||||| || ||| ||| || Sbjct 112950 AAAGTCAGAGGATTCCTTCTTAGCTGCGGTGATGGGCATCGCATCCTGTTTCAGTAATGT 112891 Query 13862 GGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGA 13921 |||| | | || | | ||||| | | || ||||||| || || || || Sbjct 112890 CTTTGTGGCTAGTCAGTTGGAGGGTGTGGTTTTTGCATCATGGAGTCAAGTTCAAGCTGA 112831 Query 13922 CCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAG------TGGAGGTACCTGCT 13975 ||||| ||||||| ||||| ||| | | | ||| |||| |||| || | Sbjct 112830 CCTCAACTGCATGAGGGACC------CCTACACGATGAAGGCAGACTGGAAGTACTTGAT 112777 Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 || || || |||||||| || || |||| |||||||| || || || Sbjct 112776 AAATCTTTGTGGGATGGAGTTTCCTATCAAAACCAACCTAGAAATTGT 112729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655962704848640