Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq314877 138 9e-28 seq123294 96.9 3e-15 >seq314877 Length=772221 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | |||||||||||||| || ||| Sbjct 564768 AGGCCTGTGATGTGTGCGATCATGTATGTGAGCAGGGCATAGCTGGCGATGTTGAAAGGT 564827 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 564828 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 564887 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 564888 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 564931 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || |||| ||||| || ||||||||||| ||||| || || || || |||| | Sbjct 568616 TCATATCTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAGACAGGGCCCAAAT 568675 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| ||||| ||| ||| || |||||||||||||| ||| || ||||| | Sbjct 568676 CTCCTTCTTCTCTGGTGGAGAATCCTAGGCAGTCCAAAAAGTCTCGGGATCCATTGGCAT 568735 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| || || ||||| ||| || ||||| | |||||||| || Sbjct 568736 CCCAGATTTTCACTCCCTTAGAAGACAGTTCTTTAGCATTTGTGGATCC 568784 >seq123294 Length=241001 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| ||| ||||| |||||| || || Sbjct 182058 TTCAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGGA 181999 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||||||||| |||||||| ||||||| ||||| || ||| Sbjct 181998 ATGGAGAACCAAGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 181951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404640671093388