Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq130668 116 2e-21 seq316040 109 3e-19 seq302728 105 4e-18 seq314340 100 2e-16 seq305757 82.4 5e-11 >seq130668 Length=27386 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| ||||| || || ||| ||| || || ||||| || || || Sbjct 9816 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9757 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| ||||||| || ||||| |||||||| || | | ||| ||||| || || Sbjct 9756 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9697 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| |||| || ||| | ||| ||||| | ||| || Sbjct 9696 ATGCCCTCCTTGTCCTGGATC-TTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGAC 9638 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | || ||||| || |||||||| Sbjct 9637 CTCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9590 >seq316040 Length=1005281 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 910481 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 910422 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || || ||||| || |||||||| | |||||| ||||| || || Sbjct 910421 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGG 910362 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | || ||||| | ||||| Sbjct 910361 AATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCCA 910303 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || || || || || | || |||| || |||||||| Sbjct 910302 CTTCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCATGAAGATCTGCAT 910254 >seq302728 Length=1132070 Score = 105 bits (116), Expect = 4e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || | || ||||| || || ||| ||| || || ||||| || ||||| Sbjct 600824 GCCACCTCTCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTATTCTGA 600883 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || || ||||| || |||||||| | |||||| ||||| || || Sbjct 600884 AAGAGTGCGACCATCCTCCAGCTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGTGG 600943 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | || ||||| | ||| | Sbjct 600944 GATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCAA 601002 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGC 34704 |||| | ||| || || || || || | || ||||| || |||||| Sbjct 601003 CTTCAAGGGTGATTGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGC 601049 >seq314340 Length=1169179 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 629760 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 629701 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || | | || || || ||||| || |||||||| | |||||| ||||| || || Sbjct 629700 AAGAGTGCAGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGG 629641 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| || | ||| || | || ||||| | ||| | Sbjct 629640 GATGCCCTCCTTGTCTTGGAT-TTCAGCTTTGACATTCTCTATGGTGTCACTGGGCTCAA 629582 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || || || || || | || ||||| || |||||||| Sbjct 629581 CTTCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 629533 >seq305757 Length=1147529 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | |||| || || || ||| || |||||||| ||||| || Sbjct 1142473 GCCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 1142414 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 1142413 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGAGG 1142354 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || || || || |||||| | || ||| | ||| || || ||| | Sbjct 1142353 GATGCCTTCTTTATCCTGGATCTTA-GCCTTCACGTTTTCAATGGTATCACTAGGCTCAA 1142295 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || || || ||||| | || ||||||||||||||||| Sbjct 1142294 CTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313436221561037