Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq316040 132 4e-26 seq130668 122 8e-23 seq305757 118 9e-22 seq100879 118 9e-22 seq169768 96.9 3e-15 seq131556 87.8 2e-12 >seq316040 Length=1005281 Score = 132 bits (146), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | || || || || |||||| | || || ||||||||||| || Sbjct 910254 ATGCAGATCTTCATGAAGACCCTCACGGGCAAGACAATCACCCTTGAAGTGGAGCCCAGT 910313 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| |||||||| || ||||| ||||| || || Sbjct 910314 GACACCATCGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACCAG 910373 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| || |||||||| |||| || | || |||| || |||||| Sbjct 910374 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCAGACTACAAC 910433 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 || || || ||||| ||| | || |||| |||| |||| |||||||| || Sbjct 910434 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATCAC 910486 >seq130668 Length=27386 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || || || || | Sbjct 9818 ATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTGGAGGTCGAGCCCAGC 9877 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||| || || ||||| |||||||| || || || || Sbjct 9878 GACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 9937 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||||| ||||||| | ||| | || || |||||| Sbjct 9938 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 9997 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||| ||| | || ||||| |||||||| |||| || Sbjct 9998 ATCCAGAAAGAGTCCACCCTGCACTTGGTCCTGCGTTTGAGGGGGGG 10044 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || || || || | Sbjct 9362 ATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTGGAGGTCGAGCCCAGC 9421 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||| || || ||||| |||||||| || || || || Sbjct 9422 GACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 9481 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||||| |||||||| | ||| | || || |||||| Sbjct 9482 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 9541 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || |||| ||||| || | || || || Sbjct 9542 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGAGGGGGGAT 9591 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || || || || | Sbjct 9590 ATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTGGAGGTCGAGCCCAGC 9649 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||| || || ||||| || ||||| || || || || Sbjct 9650 GACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 9709 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||||| |||||||| | ||| | || || |||||| Sbjct 9710 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 9769 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || |||| ||||| || | || || || Sbjct 9770 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGAGGGGGGAT 9819 >seq305757 Length=1147529 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || || || ||||| || || Sbjct 1142246 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCTAGT 1142305 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || || || ||||||||||| || || || || Sbjct 1142306 GATACCATTGAAAACGTGAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 1142365 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 1142366 CAGAGGCTCATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1142425 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || ||||||||| | || ||||| | ||| || |||||||| Sbjct 1142426 ATTCAGAAAGAGTCGACCCTGCACCTGGTTCTTCGTCTGAGGGGTGGC 1142473 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||||||||||| | || || || || || || || Sbjct 1142018 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 1142077 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || || ||||||||||| || || || || Sbjct 1142078 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 1142137 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 1142138 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1142197 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || |||| ||||| || | ||||| || Sbjct 1142198 ATCCAGAAAGAGTCAACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 1142247 >seq100879 Length=438 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || || || ||||| || || Sbjct 434 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCCAGT 375 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || || ||||||||||| || || || || Sbjct 374 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 315 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 314 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 255 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || ||||||||| | || ||||| | ||| || |||||||| Sbjct 254 ATTCAGAAAGAGTCGACCCTGCACCTGGTTCTTCGTCTGAGGGGTGGC 207 >seq169768 Length=302843 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||||| ||||| | || || || | || || || Sbjct 109127 ATGCAGATCTTCGTGAAAACCCTGACCAGCAAGACCATCACCCTACAGGTTGAGCCCAGT 109068 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || ||||||||||| || | ||| || Sbjct 109067 GATACCATTGAGAATGTGAAGGCCAAGATCCATGATAAAGAAGGCATCCCTCTCGACCAG 109008 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | | || |||| ||||||||| Sbjct 109007 CAGAGGCTCATTTCTGCAGGCAAGCAGCTGGAAGATGGCTGCACTCTTTCTGATTACAAC 108948 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| ||| | || |||| | | | || |||||||| Sbjct 108947 ATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCATCTGAGGGGTGGC 108900 >seq131556 Length=230148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 ||||||| || | ||||| || ||||| ||| | || ||||| || || |||| | | Sbjct 29212 TGCAGATTTTCATGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTCAACCTCCAG 29271 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 || | | || | || || || || ||||| || ||||| || || || ||||| | Sbjct 29272 ACACAGTAGAAAATGTAAAGACCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAGC 29331 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 | | | || | || ||||| ||| ||||||| | | || | || || ||||||| Sbjct 29332 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTCTGTCTGACTACAACA 29391 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 29392 TTCAAAAGGAGTCTACTCTTCATGTTGTGTTGAGACTTCGTGGTGG 29437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433134293626277