Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq315805 143 2e-29 seq314862 118 9e-22 seq314877 111 1e-19 seq236152 95.1 1e-14 >seq315805 Length=407868 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 1291 TTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATG 1350 |||| |||||||| ||| | || | ||||||||||||| | ||||| | ||| | Sbjct 108869 TTGTGACATGGCAGAAAAAGACGGCTTTAAGCCCAGAAAACGTAGCCACCTACAGTGAGA 108928 Query 1351 ACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGAC 1410 | |||||||| || || ||||| || || || | || | ||||| || |||| |||| Sbjct 108929 AACACGGGGTGGTGGTCCAGCCTGCCTATAAGAACAAGTTAAACATCACCCAGCTGGGAC 108988 Query 1411 TACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAGT 1470 | |||||| |||| || ||||||||||| || || || ||||||||||| |||| || Sbjct 108989 TCCAAAACTCAACCATCACCTTCTGGAATGTCACCTTAGAGGATGAAGGGTGTTACATGT 109048 Query 1471 GTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCT 1519 || | || || || ||||| |||||||| ||||||| || ||||| Sbjct 109049 GTCTCTTCAATACCTTTGGTATGGGGAAGATCTCAGGAACAGCCTGTCT 109097 >seq314862 Length=267640 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 169047 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 169106 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 169107 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 169166 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 169167 ATCGCCCTGTGGATGACTGA 169186 >seq314877 Length=772221 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| || ||||||||||| | || |||||||| | || ||||| Sbjct 564768 AGGCCTGTGATGTGTGCGATCATGTATGTGAGCAGGGCATAGCTGGCGATGTTGAAAGGT 564827 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||||||| |||| |||||||||| ||||| || ||||| ||||| | Sbjct 564828 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 564887 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || ||||| | | | || ||||||||||| |||| Sbjct 564888 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 564928 >seq236152 Length=34290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 60287 ACAGAGTTTGCAACATGTTTTTGATGAGCTACATATCCTATGTGTAAATTTTCAACAGTT 60346 ||| ||| | ||||||||| ||||| |||||||||||||||| || | | | | || Sbjct 29168 ACATAGTGAGAAACATGTTTCTGATGTGCTACATATCCTATGTTTATACCGTGTATATTT 29109 Query 60347 GCTAGTAACATGCTTATAATTGCAACAACTATCCATGTTTTTCCATGTCTTCTGGGAATT 60406 | ||| | || || |||| ||||| | ||| |||||||| |||||||| || | | Sbjct 29108 TTCAATAAAAAGCAAATGATTGGAACAATAAACCAGGTTTTTCCGTGTCTTCTAGGTACT 29049 Query 60407 AAATAAACACTTGATTTTTGTTTGAAAGTT 60436 ||| ||||||||| ||| || || ||| || Sbjct 29048 AAAAAAACACTTGCTTTCTGCTTTAAAATT 29019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412773511346596